PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000211.1_g00022.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 377aa    MW: 41031.8 Da    PI: 6.4353
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000211.1_g00022.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-142471148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEde+l  +  + G g+W+ Iar  g+ R++k+c++rw +yl
  Itr_sc000211.1_g00022.1 24 KGLWSPEEDEKLMGYMLRNGQGCWSDIARNAGLQRCGKSCRLRWINYL 71
                             678*******************************************97 PP
2Myb_DNA-binding52.51.1e-1677120146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+++++E+el++++++ lG++ W+ Ia++++ gRt++++k++w++
  Itr_sc000211.1_g00022.1  77 RGAFSPQEEELIIHLHNILGNR-WSQIAARLP-GRTDNEIKNFWNS 120
                              89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-231874IPR009057Homeodomain-like
PROSITE profilePS5129416.1721971IPR017930Myb domain
SuperFamilySSF466891.8E-2822118IPR009057Homeodomain-like
SMARTSM007171.9E-92373IPR001005SANT/Myb domain
PfamPF002495.2E-132471IPR001005SANT/Myb domain
CDDcd001673.10E-82771No hitNo description
PROSITE profilePS5129425.28272126IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-2675127IPR009057Homeodomain-like
SMARTSM007172.8E-1676124IPR001005SANT/Myb domain
PfamPF002492.6E-1577120IPR001005SANT/Myb domain
CDDcd001671.68E-1179119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MRKPDPMGKD GKLGNNNSKA KLRKGLWSPE EDEKLMGYML RNGQGCWSDI ARNAGLQRCG  60
KSCRLRWINY LRPDLKRGAF SPQEEELIIH LHNILGNRWS QIAARLPGRT DNEIKNFWNS  120
TIKKRLKNAN NNQNNSSLSP NTSDSSSENP RPMIGGCGGG GGAAAALILP AMHHHQPEFM  180
ASICMDSSPS SSSSMHTNML PHFNPFPPPP AGFEAEAAAA GLFGLPPSLA AQLVGVGGPS  240
AAGECGFLGD YNVVVEPYGV MGLENDLSVP ALESISATNN HTNKDSKGET NVVDNNNNIN  300
NVDYYGIFDK KANAVNSNSN NNNNQHLYEE GSIKVEDYMV GFGNHHWSGE SLRIGELDWE  360
GLLANVPSLP YLDFQVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28221265108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186588.10.0PREDICTED: myb-related protein Hv33
TrEMBLA0A1S3WZJ01e-126A0A1S3WZJ0_TOBAC; myb-related protein Hv33-like
STRINGXP_009612035.11e-127(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-69myb domain protein 83