PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000208.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 224aa    MW: 23786.7 Da    PI: 4.6951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000208.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-194191155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Itr_sc000208.1_g00007.1 41 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 91
                             68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-134191IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2142100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-3242100IPR001471AP2/ERF domain
PROSITE profilePS5103223.4464299IPR001471AP2/ERF domain
SMARTSM003801.6E-3542105IPR001471AP2/ERF domain
PRINTSPR003672.2E-104354IPR001471AP2/ERF domain
CDDcd000189.95E-3443101No hitNo description
PRINTSPR003672.2E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MMSTESLPDS PVSVVNCGGG GEVSGPESKK MKRIRDSSKH PVYRGVRMRS WGKWVSEIRE  60
PRKKSRIWLG TFPTPEMAAR AHDVAALSIK GSSAILNFPD LAGILPRPDS LSPRDIQSAA  120
AKAAAMEKFD LPSPSSHSSS SSSSSLSSLV SAIDLATSEE LSEIVELPSL DTSFDSLGLG  180
GEIVYVDSVE EWLYPPPWLG GAADDGGGGP GIISSSFESS LWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1938991072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184931.11e-107PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD34e-71DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A200QDK75e-83A0A200QDK7_9MAGN; AP2/ERF domain
STRINGXP_004291182.19e-79(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-66ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]