PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000207.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 489aa MW: 53404.9 Da PI: 6.3849

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000207.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.6e-10	349	408	5	64
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 kr +r NR +A rs +RK+ +i eLe kv++L++e ++L +++ ++k + l s+++ Itr_sc000207.1_g00017.1 349 KRVKRILANRQSAARSKERKLRYISELELKVQTLQSEATTLSAQVNIMQKDLDDLSSHNH 408 899*********************************************999999999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-16	345	409	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.68	347	410	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.47E-11	349	403	No hit	No description
Pfam	PF00170	3.6E-10	349	407	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.9E-10	349	405	No hit	No description
CDD	cd14703	3.67E-22	350	399	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MILSDGSWCE LLQVQIKISL VVTSDYSSPS RLIVMAQSNS KPPIGQNFGF GASHARSLSQ 60 PHFFANNCLP PLSPFPHGES SMPAANSGMK DVQMDEVDVN SRGAPIASVV KENVFRGSDS 120 LPPRKGHRRA NSDVPMGFSA MIQSSPQLMP ISGHGVFGKS EYSGDFLGRE KPICLQKREI 180 DVSSDRKSEG EVIDELFSSY MNLDSMETFN SSGTDDKDKD SMVSGTKMSG GDSGNEVESV 240 SKGKGAQIHI TGSREGVKRC AAGDIAPTAR HFRSLSMDSA LENLNFGDES PKLPASLGNQ 300 VGQLSPSNSG YESSSKLNFD FGNAEFNEAE MKKIMADERL AEIATSDPKR VKRILANRQS 360 AARSKERKLR YISELELKVQ TLQSEATTLS AQVNIMQKDL DDLSSHNHEL KFRLQAMEQQ 420 AQLRDALHEA LTAEVQRLKV ATGELSDECR LSSSCVPQEI LQHHMSQMQR QQPGQVPQLS 480 MATSRTAST

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MILSDGSWCE LLQVQIKISL VVTSDYSSPS RLIVMAQSNS KPPIGQNFGF GASHARSLSQ  60
PHFFANNCLP PLSPFPHGES SMPAANSGMK DVQMDEVDVN SRGAPIASVV KENVFRGSDS  120
LPPRKGHRRA NSDVPMGFSA MIQSSPQLMP ISGHGVFGKS EYSGDFLGRE KPICLQKREI  180
DVSSDRKSEG EVIDELFSSY MNLDSMETFN SSGTDDKDKD SMVSGTKMSG GDSGNEVESV  240
SKGKGAQIHI TGSREGVKRC AAGDIAPTAR HFRSLSMDSA LENLNFGDES PKLPASLGNQ  300
VGQLSPSNSG YESSSKLNFD FGNAEFNEAE MKKIMADERL AEIATSDPKR VKRILANRQS  360
AARSKERKLR YISELELKVQ TLQSEATTLS AQVNIMQKDL DDLSSHNHEL KFRLQAMEQQ  420
AQLRDALHEA LTAEVQRLKV ATGELSDECR LSSSCVPQEI LQHHMSQMQR QQPGQVPQLS  480
MATSRTAST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019156132.1	0.0	PREDICTED: transcription factor RF2a-like isoform X2
TrEMBL	A0A1J6IG02	0.0	A0A1J6IG02_NICAT; Transcription factor rf2b
STRING	XP_009798752.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1265	24	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-110	bZIP family protein