PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000206.1_g00022.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 204aa    MW: 21887.9 Da    PI: 5.0943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000206.1_g00022.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-194494255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             gy+GVr++k++g+Wv+eIr+p     r   r++lg+f t+e+Aa a++ a ++l+g
  Itr_sc000206.1_g00022.1 44 GYRGVRRRKSTGKWVSEIREP-----RspNRIWLGTFATPEMAAVAYDVAVRALRG 94
                             8*******************9.....4489************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.40E-2843104No hitNo description
SuperFamilySSF541712.29E-2044104IPR016177DNA-binding domain
SMARTSM003802.7E-3344108IPR001471AP2/ERF domain
PfamPF008478.9E-124494IPR001471AP2/ERF domain
PROSITE profilePS5103221.90444102IPR001471AP2/ERF domain
PRINTSPR003679.1E-54556IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-2945104IPR001471AP2/ERF domain
PRINTSPR003679.1E-56884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MARLSSLELQ CVLFFMKPKK QRGNLRCSVV MSEGPSAAGG RSAGYRGVRR RKSTGKWVSE  60
IREPRSPNRI WLGTFATPEM AAVAYDVAVR ALRGPNAELN FPNSAASLPV PASNSARDIQ  120
EAAASAAAAL GAAADALEVQ KEGDKLLDIN PGEECKEFVD EDLIFDMPNV LVNMAEGMLL  180
SPPRLDVAGD CDAAAADHNL WNYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1331103173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187647.11e-103PREDICTED: ethylene-responsive transcription factor ERF024-like
RefseqXP_019187648.11e-103PREDICTED: ethylene-responsive transcription factor ERF024-like
RefseqXP_019187649.11e-103PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR02e-52ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A1J6KVB51e-64A0A1J6KVB5_NICAT; Ethylene-responsive transcription factor erf024
STRINGXP_009793202.18e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-41ERF family protein