PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000205.1_g00022.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 437aa    MW: 49223.2 Da    PI: 7.8081
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000205.1_g00022.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-17196242148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g WT eEd ll+++v+++G + W+ Ia+ +  gR +kqc++rw+++l
  Itr_sc000205.1_g00022.1 196 KGQWTVEEDRLLIQLVEKHGVRKWSHIAQLLK-GRIGKQCRERWHNHL 242
                              799****************************9.*************97 PP
2Myb_DNA-binding57.43.4e-18248290145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              ++ W++eEde+l++a+ + G++ W+ Ia++++ gRt++++k++w+
  Itr_sc000205.1_g00022.1 248 KDVWSEEEDEILIKAHVEVGNK-WAEIAKRLP-GRTENSIKNHWN 290
                              578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.19191246IPR017930Myb domain
SMARTSM007171.1E-17195244IPR001005SANT/Myb domain
SuperFamilySSF466895.74E-31195289IPR009057Homeodomain-like
PfamPF002493.7E-17196242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-27197249IPR009057Homeodomain-like
CDDcd001673.05E-16199242No hitNo description
PROSITE profilePS5129421.774247297IPR017930Myb domain
SMARTSM007171.2E-17247295IPR001005SANT/Myb domain
PfamPF002492.3E-16248290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-22250296IPR009057Homeodomain-like
CDDcd001678.35E-14251293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEFDSNSTHV GPALQPFPMP TNYFKSEFDD VFHTDSKGYN FQDLHPFDHH FSSSSTSPLV  60
GPSPISFYPD LAIQMNGFDP FDPFSNDNSP SHHQNLNLFK PSQENSEIAH NNNNGGAIGG  120
YLSYPNPKIL SFHHDLKPTN VVVPDESSCV SANPGFRKET GGRKRSNRAH QTTDNNGASA  180
SMKKHSKGRK KTKSSKGQWT VEEDRLLIQL VEKHGVRKWS HIAQLLKGRI GKQCRERWHN  240
HLRPNIKKDV WSEEEDEILI KAHVEVGNKW AEIAKRLPGR TENSIKNHWN ATKRRQFSRR  300
KCRTKWPRPS SLLQNYIKTV LNSEKNGGGA NRRNSSTNAE ASTMAAAVAP PPPPPPPPKA  360
EPMEYCGGDN LVPDYDFALD EKLFAGNGIE SFIEDIPGGP LVLDEKYMEE MAYDMPPMMF  420
GEPKELDLMD MISHVNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-431962964104C-Myb DNA-Binding Domain
1msf_C1e-431962964104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173913.10.0PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L22e-80MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A484N3J11e-179A0A484N3J1_9ASTE; Uncharacterized protein
STRINGXP_009603629.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.16e-78myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]