PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000202.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 678aa    MW: 75063 Da    PI: 5.6834
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000202.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.33.4e-24124225199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+lt+sd+++ g +++p+ +ae++       + ++ +  t+ ++d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD 
  Itr_sc000202.1_g00007.1 124 FSKTLTQSDANNGGGFSVPRYCAETIfplldysDDPPVQ--TIFVKDVHGETWQFRHIYRGTPRRHLLTTGWSNFVNRKKLIAGDL 207
                              88*****************************96555555..8******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              vvF   +++++  +v+++r+
  Itr_sc000202.1_g00007.1 208 VVFV--RKENGDIHVGIRRA 225
                              ****..4478888****997 PP
2Auxin_resp97.71.6e-32292375183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              aa  a+++++Fev+Y+P ast+eFvv+++ v++a+++k+++GmR+km  eted s++++ +Gtv++v++ dp++Wp+S+W +L+
  Itr_sc000202.1_g00007.1 292 AALLAASGQPFEVLYYPLASTPEFVVRASTVRDAMRIKWCPGMRVKMPSETEDPSRISWfMGTVSSVEAEDPIKWPDSPWNLLQ 375
                              5678999*************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-30112235IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-38117228IPR015300DNA-binding pseudobarrel domain
CDDcd100175.47E-21123220No hitNo description
PfamPF023622.2E-21124225IPR003340B3 DNA binding domain
PROSITE profilePS5086313.606124226IPR003340B3 DNA binding domain
SMARTSM010193.1E-24124226IPR003340B3 DNA binding domain
PfamPF065071.9E-27293375IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MVNAMNPVDN FMNETEKLLD PQLWHACAGG MVEIPEVNSK VFYFPQGHAE HFKKSVDFGM  60
CGRIPPLILS RVSAVKYLAD SETDEVYAKI GLVPLGGSGE HDVYDDGGFL GVVKYKSEEK  120
PNSFSKTLTQ SDANNGGGFS VPRYCAETIF PLLDYSDDPP VQTIFVKDVH GETWQFRHIY  180
RGTPRRHLLT TGWSNFVNRK KLIAGDLVVF VRKENGDIHV GIRRARRRIG RGPEACSRWQ  240
TGTGSYATSL NRAFSGNFSE GDEKFVQNDR TEVSGVGTGG RSDVLIESVT EAALLAASGQ  300
PFEVLYYPLA STPEFVVRAS TVRDAMRIKW CPGMRVKMPS ETEDPSRISW FMGTVSSVEA  360
EDPIKWPDSP WNLLQVAWDE PDLLQNTKRV SPWLVELVTD VSPVLQPHLS PPRKKLRLPQ  420
PLPLVGQLPA PALFCNPVIP SSLLSYVSDN IPTGIQGARH AQCGLSSKDL HFNKMNSELF  480
PFGFREVEGT ILPNTLTGNV MASSENEENV TCLLTMENNS PNLKKNNEEK IPAFMLFGKP  540
IFTEQQMPNS CSGETIGKSL SNSNQEKTKN LLDSPGSAVL QNGPLDNSSD GMFPFYKTQK  600
SEPGFGTGHC KVFIASEDVE QTLESSLSSF NELYKKLVNV FGIETTEMFN SALYQDATGA  660
VKHPRDEPFR QIPSSILL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-731839650388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196602.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U7X1180.0A0A1U7X118_NICSY; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]