PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000201.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 385aa    MW: 41416.6 Da    PI: 7.1876
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000201.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.11.3e-37501832133
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                               g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWLl++a p i el++++   +     +++++ +     
  Itr_sc000201.1_g00009.1  50 SGGKDRHSKVWTSKGLRDRRVRLSVNTAVQFYDLQDRLGYDQPSKAVEWLLKAAAPFIEELPSLNDLFPDTLqLSDERKPN----- 130
                              689*************************************************************33333222222333333..... PP

                      TCP  87 sg......kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                               g      +a++s+++  ++ + +++ l+l++ esr  ar+rarer +ek + k
  Itr_sc000201.1_g00009.1 131 -GgagvepAAQQSSPSDTSKGSAPSAGLSLSRsESRILARERARERAAEKEKSK 183
                              .23345556666666666666677778999999****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-3551182IPR005333Transcription factor, TCP
PROSITE profilePS5136930.61752110IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.334162181IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEVENPRIGN GGGEDGEIKR SSNGGGGGGG GLGRLCGWPS SRIVRVSRAS GGKDRHSKVW  60
TSKGLRDRRV RLSVNTAVQF YDLQDRLGYD QPSKAVEWLL KAAAPFIEEL PSLNDLFPDT  120
LQLSDERKPN GGAGVEPAAQ QSSPSDTSKG SAPSAGLSLS RSESRILARE RARERAAEKE  180
KSKDDIAPAP GSLISQNSSF TELLTNGGNN NGKDEESNFF SLDYVTTTGL LTRSTAQPSS  240
PDFPAHVHLG NPIHLPPHPP PPPPVSSPLF TIPGEHHSEL QNFSFVTDHR HHNNEYNLNF  300
SISSPSSHSG LTAFRGTLQS NSPSSPSLLP HLQRFPAVDL TPASFFTAAA PTAPVDNHHH  360
FLGFDARLQL FYGDHHADHN GKGKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2457111155Putative transcription factor PCF6
5zkt_B7e-2457111155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170304.11e-179PREDICTED: transcription factor TCP24
RefseqXP_019170305.11e-179PREDICTED: transcription factor TCP24
TrEMBLA0A484M0551e-107A0A484M055_9ASTE; Uncharacterized protein
STRINGMigut.M00891.1.p1e-98(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.27e-39TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2