PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000200.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 578aa    MW: 62654.3 Da    PI: 4.8825
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000200.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS460.11.3e-1402115751374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              lv++L++cAea+++++++la+al++++  la +++ +m+++a+yf+eALa+r++r        l ps+ +++  s+ l+    f+e
  Itr_sc000200.1_g00011.1 211 LVHTLMACAEAIQKENMKLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYR--------LYPSNHNDSAFSDLLQ--MHFYE 286
                              689****************************************************........5566666444555544..46*** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                               +P+lkf+h+taNqaIlea+++++rvH+iDf+++qG+QWpaLlqaLa Rp+gpps+R+Tg+g+p++++++ l+e+g++La++Ae++
  Itr_sc000200.1_g00011.1 287 SCPYLKFAHFTANQAILEAFANKNRVHVIDFSMKQGMQWPALLQALALRPGGPPSFRLTGIGPPSNDNTDHLQEVGWKLAQLAETI 372
                              ************************************************************************************** PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                              +v+fef+ +va++l+dl+ ++++++ gE++aVn++++lh+ll++++++e+    vL+++k+++P++v+vveqea+hn++ F++rf+
  Itr_sc000200.1_g00011.1 373 NVEFEFRGFVANSLADLDASMFNIQDGETVAVNSIFELHQLLARPAAIEK----VLSVIKDIKPEIVTVVEQEANHNGPVFMDRFT 454
                              **********************************************9999....******************************** PP

                     GRAS 259 ealeyysalfdsleaklpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                              e+l+yys+lfdsle  +++e     ++++++++++lgr+i+nvvaceg +r+erhetl++Wr r+++aGF+pv+l+++a+kqa++l
  Itr_sc000200.1_g00011.1 455 ESLHYYSTLFDSLEGCAASEGgtvcDQDKVMSEVYLGRQICNVVACEGVDRVERHETLAQWRTRFKSAGFSPVHLGSNAYKQASML 540
                              *************9887777678899************************************************************ PP

                     GRAS 341 lrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              l+ ++ +dgyrvee++g l+lgW++rpL+++SaW+
  Itr_sc000200.1_g00011.1 541 LALFAgGDGYRVEENDGGLTLGWHTRPLIATSAWK 575
                              **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011295.3E-3549122No hitNo description
PfamPF120416.6E-3549114IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098568.07185554IPR005202Transcription factor GRAS
PfamPF035144.6E-138211575IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MKRGNFNRSV QGSFAGAAAS GGGGGSGSSS GVSKGKKVWE ESEQDAGMDE LLAVLGYKVK  60
SSDMAEVAQK LEQLEEVMGS VQGDDLSNFA SETVHYNPSD LSSWVDSMIS ELNPGDPFLS  120
QTESSAITSL PTQIFDDSSF DSDLTAIPGK AAYPQPPSKR FRTASTTSST SSNMQLGAAA  180
AWGSPSESIS PSSESTRSVV LVDSQENGVR LVHTLMACAE AIQKENMKLA EALVKQIGFL  240
AVSQAGAMRK VATYFAEALA RRIYRLYPSN HNDSAFSDLL QMHFYESCPY LKFAHFTANQ  300
AILEAFANKN RVHVIDFSMK QGMQWPALLQ ALALRPGGPP SFRLTGIGPP SNDNTDHLQE  360
VGWKLAQLAE TINVEFEFRG FVANSLADLD ASMFNIQDGE TVAVNSIFEL HQLLARPAAI  420
EKVLSVIKDI KPEIVTVVEQ EANHNGPVFM DRFTESLHYY STLFDSLEGC AASEGGTVCD  480
QDKVMSEVYL GRQICNVVAC EGVDRVERHE TLAQWRTRFK SAGFSPVHLG SNAYKQASML  540
LALFAGGDGY RVEENDGGLT LGWHTRPLIA TSAWKLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6620657414378Protein SCARECROW
5b3h_A3e-6620657413377Protein SCARECROW
5b3h_D3e-6620657413377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160270.10.0PREDICTED: DELLA protein GAI1-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1U7XHE40.0A0A1U7XHE4_NICSY; DELLA protein GAI1-like
STRINGXP_009789076.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein