PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000196.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25470.3 Da PI: 8.3579 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.3e-20 | 35 | 83 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa++ l+g Itr_sc000196.1_g00017.1 35 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARTLRG 83 8*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.8E-36 | 34 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 34 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.60E-18 | 34 | 91 | No hit | No description |
PROSITE profile | PS51032 | 23.235 | 34 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 35 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 35 | 46 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-22 | 35 | 92 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-10 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRRGRAAAAA KQAAAAGTPQ PGNANGSGGS QEIRFRGVRK RPWGRFAAEI RDPWKKTRVW 60 LGTFDSAEDA ARAYDAAART LRGPKAKTNF PLPINSHLPP YPHHQFIHTS NAPHDPFIDP 120 RMYSQDPQII STRPTSSGMS STVESFSGPR PPRLQTTTPP ARHHPRSPPV VPDDCHSDCD 180 SSSSVVEDGD YENFASSSFR KPLPFDLNMP PPMDAVHAGA EAEADDLHCT ALCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 35 | 96 | 6 | 68 | ATERF1 |
3gcc_A | 6e-22 | 35 | 96 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196482.1 | 1e-116 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 1e-72 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0V0HV08 | 1e-105 | A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like | ||||
STRING | PGSC0003DMT400037359 | 1e-96 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3330 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 2e-34 | ethylene responsive element binding factor 3 |