PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000191.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24648.6 Da PI: 8.5965 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 30 | 78 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g+++AeIrd ++ ++r++lg+f +ae Aa+a++aa+++l+g Itr_sc000191.1_g00011.1 30 FRGVRKRP-WGKFAAEIRDpWK----KTRVWLGTFNSAEAAARAYDAAARNLRG 78 8*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.22E-17 | 29 | 86 | No hit | No description |
SMART | SM00380 | 7.3E-36 | 29 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.196 | 29 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-12 | 29 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-31 | 30 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 30 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.9E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MRRGRAAPEL KQSPAVGEAN GSGGSKEIRF RGVRKRPWGK FAAEIRDPWK KTRVWLGTFN 60 SAEAAARAYD AAARNLRGPK AKTNFPLPAP SHLPPYHNLQ FNQRPNANDS FVDQQMYMQE 120 HPILSQRPTS SGMSSTVESF SGPRPPRQQT APPPPSRRHP VVPDDCHSDC DSSSSVVDDM 180 DCENIASSSF RKPLPFDLNL PPAVEYNADA EAYELQCCTA LCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 24 | 86 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019183521.1 | 1e-128 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 8e-64 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0V0HV08 | 6e-92 | A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like | ||||
STRING | PGSC0003DMT400057443 | 4e-86 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3330 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 7e-37 | ethylene responsive element binding factor 3 |