PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000191.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 520aa MW: 56511.6 Da PI: 7.0091

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000191.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	53.8	3.8e-17	271	307	2	37
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 +Dg++WrKYGqK+ kg+++pr+YYrCt++ +Cpv+k+ Itr_sc000191.1_g00004.1 271 SDGCQWRKYGQKMSKGNPCPRAYYRCTMTsTCPVRKQ 307 7*************************99****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-16	256	307	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-15	264	307	IPR003657	WRKY domain
PROSITE profile	PS50811	19.543	265	370	IPR003657	WRKY domain
SMART	SM00774	1.2E-23	270	369	IPR003657	WRKY domain
Pfam	PF03106	1.9E-15	272	307	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	5.4E-4	348	370	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MDAHHLLHHP TVILNSLDDP TLTAPAPAFR PEKRAVNELD FFKRENSDLD SAMDEALVSK 60 GNGRRVGDEA VNHPPVLDTG LDLLGSSKKS MVFHGASPPA TMEHKATVEE ERSLYLTALR 120 EELERMNSEN QRLKSMLNQV HEKYNALKMH YAYILEHQQT LKPEIPEDDK SGKLDQMNDG 180 FAEGNEKKRK LTDDMKEEHS HSSPEGAGAS PPCPEDNTRE ESPDKVQQKL IGRSNGEHAD 240 HLLPAAADQH APAAKKARVS VRIPCDTPYC SDGCQWRKYG QKMSKGNPCP RAYYRCTMTS 300 TCPVRKQGPS RLPFFNRWPP SAGEGGQDGR LNILRRRPSS TSRPLCFRRC AEDRSVMIVT 360 YEGEHNHPLP PVARPMASTT SAAATMLLSG AARSADGGVR PANLDALPAN FLPTISTFAP 420 VPTITLDLTN PMATQAQTPQ PPPFHSPNPP LPPGIVSAAA AALTRNPSFT AALVSAIASI 480 IGGNNNAAQP PPPPPNSADL SDQDVKPSPS IESNVEAKVL

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MDAHHLLHHP TVILNSLDDP TLTAPAPAFR PEKRAVNELD FFKRENSDLD SAMDEALVSK  60
GNGRRVGDEA VNHPPVLDTG LDLLGSSKKS MVFHGASPPA TMEHKATVEE ERSLYLTALR  120
EELERMNSEN QRLKSMLNQV HEKYNALKMH YAYILEHQQT LKPEIPEDDK SGKLDQMNDG  180
FAEGNEKKRK LTDDMKEEHS HSSPEGAGAS PPCPEDNTRE ESPDKVQQKL IGRSNGEHAD  240
HLLPAAADQH APAAKKARVS VRIPCDTPYC SDGCQWRKYG QKMSKGNPCP RAYYRCTMTS  300
TCPVRKQGPS RLPFFNRWPP SAGEGGQDGR LNILRRRPSS TSRPLCFRRC AEDRSVMIVT  360
YEGEHNHPLP PVARPMASTT SAAATMLLSG AARSADGGVR PANLDALPAN FLPTISTFAP  420
VPTITLDLTN PMATQAQTPQ PPPFHSPNPP LPPGIVSAAA AALTRNPSFT AALVSAIASI  480
IGGNNNAAQP PPPPPNSADL SDQDVKPSPS IESNVEAKVL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019183310.1	0.0	PREDICTED: WRKY transcription factor 42-like isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	2e-49	WRKY family protein