PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000190.1_g00028.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 312aa    MW: 35463.6 Da    PI: 6.9598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000190.1_g00028.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05148167120
                              EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                              ++Cp C k+F+r  n++ H+
  Itr_sc000190.1_g00028.1 148 FECPVCFKTFNRYNNMQMHM 167
                              89*****************9 PP
2zf-C2H215.74.1e-05232254123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C +Cgk F  + + ++H +++
  Itr_sc000190.1_g00028.1 232 FTCRKCGKAFAVRGDWRTHEKNC 254
                              89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.57E-5144170No hitNo description
SMARTSM003550.29148170IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806148175IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-6148167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-6217252No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5219252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035538232252IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSDPYTNFHS QHWLKLHHFP PPNTSTTFHF SQTTPPSPPL REALPLLTLG PTRHKENNGQ  60
EEEEGDEGVT VALHIGPPNP SASDLQAAAA ASWSCSVTQD NYKDRQDINE DEEDDCGVEC  120
LPYMMNKLNK GQYWIPTPSQ ILIGPTQFEC PVCFKTFNRY NNMQMHMWGH GSQYRKGPES  180
LRGTQPTGML RLPCYCCAAG CRNNIDHPRS KPLKDFRTLQ THYKRKHGVR PFTCRKCGKA  240
FAVRGDWRTH EKNCGKLWYC ICGSDFKHKR SLKDHIKAFG DGHGAYGDDG FEEEEDPASE  300
IEQDGEPNSI HR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155002.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-133ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2R6QV701e-152A0A2R6QV70_ACTCH; Zinc finger protein
STRINGVIT_08s0007g08070.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-132C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]