PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000190.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 257aa MW: 26763.3 Da PI: 8.8249 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.8 | 1.9e-08 | 59 | 84 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ Itr_sc000190.1_g00004.1 59 KTKLCNKYNSAEGCKFGDKCHFAHGE 84 89**********************96 PP | |||||||
2 | zf-CCCH | 35.4 | 1.8e-11 | 224 | 248 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++f + G C +G+rC+FaHg Itr_sc000190.1_g00004.1 224 YKTKLCDNFTK-GSCTFGERCHFAHG 248 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.578 | 1 | 23 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 7 | 21 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.66 | 9 | 20 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-13 | 57 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 57 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-8 | 57 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.676 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-6 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.92E-14 | 124 | 199 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 4.2E-15 | 128 | 198 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 6.5E-12 | 128 | 198 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.068 | 129 | 193 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.7E-11 | 131 | 195 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 7.57E-14 | 131 | 193 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-16 | 220 | 253 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-9 | 221 | 253 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.389 | 223 | 250 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 223 | 249 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-9 | 224 | 248 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MHVNALTAGC PFGESCHFLH HVPGGYNAVA QIMNLAPAPN SRNMPPPPIS NGTSGAAVKT 60 KLCNKYNSAE GCKFGDKCHF AHGEWEIGKP IMPGHEDPRA MGPGPLPGRF GGRMEQQPVS 120 GPAASFGSSA TAKISVDASL AGAIIGKSGV NSKQICRQTG VKLSIRDHET DKTLKNIELE 180 GTFEQISQAS AMVRELISSL GSVGGPGRAA PAAHGGPASH SSNYKTKLCD NFTKGSCTFG 240 ERCHFAHGAA EMRKSGV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019154275.1 | 1e-167 | PREDICTED: zinc finger CCCH domain-containing protein 44-like | ||||
Swissprot | Q7F8R0 | 4e-96 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A1J6IEQ9 | 1e-149 | A0A1J6IEQ9_NICAT; Zinc finger ccch domain-containing protein 14 | ||||
STRING | XP_009780696.1 | 1e-149 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-65 | C3H family protein |