PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000179.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 348aa    MW: 37751.6 Da    PI: 10.2774
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000179.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-31276333359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Itr_sc000179.1_g00014.1 276 DDYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERALDDPTMLIVTYEGDHNHS 333
                              99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-15230272IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.5E-33262333IPR003657WRKY domain
PROSITE profilePS5081130.435269335IPR003657WRKY domain
SuperFamilySSF1182909.81E-27271333IPR003657WRKY domain
SMARTSM007749.3E-37274334IPR003657WRKY domain
PfamPF031069.5E-27276332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAVELMSGFR SDLGGKMEEN AVQEAATAGL QSVEKLIRLI SQSQQQNSGF SAAPPSPAFS  60
SADYQAEAET AVTKFKKFIS LLDRSRTGHA RFRRGPVVNQ KREVDPPPVN QNSSSRIRVS  120
EEQPEKPEKK IYHPKPIQCL PPLPHHHQPA KNASAANTID RKEPSTTISF AAMAAPSPAG  180
SFISSLTGDT DSVQPSLSSG FQITNLSQVS SAGRPPLSSS SFKRKSSSID DAAVKCHSAG  240
GSASGRCHCP KKRKTRVKRV VRVPAISLKM ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC  300
SSIRGCPARK HVERALDDPT MLIVTYEGDH NHSRSITEAP SALILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21262332271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152708.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX05e-93WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLC7ENF81e-167C7ENF8_IPOBA; WRKY1
STRINGXP_009604893.11e-164(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-73WRKY DNA-binding protein 7