PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000176.1_g00029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 281aa MW: 30703 Da PI: 9.6338 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.2 | 2.6e-29 | 68 | 136 | 2 | 70 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak i++l+ ++ ++ Itr_sc000176.1_g00029.1 68 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKGDIDQLPPLQIPPR 136 689*************************************************************66555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.4E-27 | 70 | 132 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.455 | 70 | 128 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MITREVDFCN AGTRQEGDKS SDVKVNLHGK TVTVAGFSAS RPTTSSSTST TSWTRLKDPR 60 IVRVSRAFGG KDRHSKVCTV RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLDA 120 AKGDIDQLPP LQIPPRIFDP FLAAPPSTAV SAVSTPPPLT SFLRWDPSPP PQKQELDHFH 180 TFNNAVLSSP SLPPSAAVSS QVLVCPPPGL QPYSFLHHPA ASPPELDLKQ IINFQMLMSS 240 NSQPPFSTSL QPPPPPPLVI KPMHFLHSHH AGAPPDKNEE P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-18 | 75 | 129 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-18 | 75 | 129 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185198.1 | 1e-135 | PREDICTED: transcription factor TCP5-like | ||||
Refseq | XP_019185199.1 | 1e-135 | PREDICTED: transcription factor TCP5-like | ||||
TrEMBL | A0A1S3XAZ7 | 1e-57 | A0A1S3XAZ7_TOBAC; transcription factor TCP13-like | ||||
STRING | XP_009623901.1 | 2e-58 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 4e-46 | plastid transcription factor 1 |