PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000176.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 481aa    MW: 52799.9 Da    PI: 8.3925
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000176.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.6e-33225281259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +DgynWrKYGqK vkgse+prsYYrCt+ +C v+kkvers  d++++eitY+g+Hnhe
  Itr_sc000176.1_g00003.1 225 SDGYNWRKYGQKLVKGSECPRSYYRCTHLNCAVRKKVERSP-DGHIIEITYKGKHNHE 281
                              7****************************************.***************7 PP
2WRKY103.61.1e-32395453159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+ +prsYYrCt++gC+v+k+ver+++dpk+v++ Yeg+Hnh+
  Itr_sc000176.1_g00003.1 395 LDDGYKWRKYGQKVVKGNANPRSYYRCTYKGCNVRKHVERASTDPKAVITAYEGKHNHN 453
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-29215283IPR003657WRKY domain
PROSITE profilePS5081125.201219283IPR003657WRKY domain
SuperFamilySSF1182904.32E-26223283IPR003657WRKY domain
SMARTSM007743.3E-36224282IPR003657WRKY domain
PfamPF031063.2E-25226281IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-35381455IPR003657WRKY domain
SuperFamilySSF1182901.22E-28387455IPR003657WRKY domain
PROSITE profilePS5081136.173390455IPR003657WRKY domain
SMARTSM007747.5E-38395454IPR003657WRKY domain
PfamPF031062.8E-25396452IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MGESREGASA VSGPSRPTIT IPPRAPFDTT LFSLGSIPGF SPGPMTLMST FFSDSDACSF  60
SQLLAGAMAS PLANPALLPD KDGDSGPGCE KLSGYKQKQP MSLLVAQSPL FMVSPRFSPS  120
GLLNSPGFLS PLQQSPFGMS HQQALAHVTA QAAFNQSYKQ MQVEYQHSSS VEGAGHQTSS  180
SMPNQVVQGE AANVALDTEC LKVETSELSQ VDSKVSSGAI EKPASDGYNW RKYGQKLVKG  240
SECPRSYYRC THLNCAVRKK VERSPDGHII EITYKGKHNH ELPKSNKRKQ DDCDQESRED  300
NSREKPQSAS RSWTETNRSN KVVCSQPETI STKLQSEQLT VASKHEEMEE TATVLDEKVD  360
GEPNAERRIS EAGSSHKTVM EPKIIVQTRS EVDLLDDGYK WRKYGQKVVK GNANPRSYYR  420
CTYKGCNVRK HVERASTDPK AVITAYEGKH NHNTPNAPNN NHTETKNSSI QQLKQQKLVA  480
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-35226455877Probable WRKY transcription factor 4
2lex_A3e-35226455877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185466.10.0PREDICTED: probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-127WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0P0UVZ21e-174A0A0P0UVZ2_SOLTU; Transcription factor
STRINGXP_009768106.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-125WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]