PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000173.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 25905.7 Da PI: 8.4782 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 36 | 81 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v+++G ++W+ ++++ gR++k+c++rw + Itr_sc000173.1_g00015.1 36 KGPWSAEEDKILTRLVERYGARNWSMMSKYIK-GRSGKSCRLRWCNQ 81 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 5.9e-17 | 90 | 132 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a+ ++G++ W+tIar ++ gRt++ +k++w++ Itr_sc000173.1_g00015.1 90 PFSAAEDEAILAAHSRYGNR-WATIARLLP-GRTDNAVKNHWNST 132 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.924 | 31 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.35E-31 | 34 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-15 | 35 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-16 | 36 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 37 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.35E-14 | 38 | 80 | No hit | No description |
PROSITE profile | PS51294 | 24.292 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-15 | 87 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.51E-12 | 90 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 90 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-13 | 90 | 132 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGAFHRWSSA SSTSSDSCSS GSSFSAGGGN QAEKIKGPWS AEEDKILTRL VERYGARNWS 60 MMSKYIKGRS GKSCRLRWCN QLSPAVQHRP FSAAEDEAIL AAHSRYGNRW ATIARLLPGR 120 TDNAVKNHWN STLKRRHKQQ SQPSDLPMTV TDVNVNVNSP GSTEFVTEKS PGADTWDDEF 180 DPMTALTLAP PGMGGDSRPP ESLPAVFWDA MKDVIAREVR DYITSSFSEA STSYH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-40 | 33 | 136 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019152341.1 | 1e-141 | PREDICTED: transcriptional activator Myb-like isoform X2 | ||||
TrEMBL | A0A162A6R0 | 2e-92 | A0A162A6R0_DAUCS; Uncharacterized protein | ||||
STRING | XP_009620130.1 | 1e-92 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7950 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 9e-56 | myb domain protein 73 |