PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000171.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 1006aa MW: 111913 Da PI: 6.8092

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000171.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.1	2e-29	603	654	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l+ l++yF++++kdAAk+Lgvc+T+LKriCRq+GIkRWP+Rkik++ Itr_sc000171.1_g00004.1 603 AEKTITLQILQQYFAGSLKDAAKSLGVCPTTLKRICRQHGIKRWPSRKIKKV 654 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.518	593	674	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-26	606	654	IPR003035	RWP-RK domain
SMART	SM00666	4.5E-23	814	899	IPR000270	PB1 domain
PROSITE profile	PS51745	23.418	814	893	IPR000270	PB1 domain
SuperFamily	SSF54277	1.96E-22	815	899	No hit	No description
Pfam	PF00564	6.5E-19	816	892	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.4E-23	816	892	No hit	No description
CDD	cd06407	3.00E-42	816	892	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1006 aa Download sequence Send to blast
MDESVFPSSI VLNTTSDSSF MDLDDLLLEG CWLETTDGSE FFQHSPFNPN ALFEPSYLLP 60 QLEPNNGELI EGVSKESEGV SKESEVERKK SSLPENLSAS QYQGVQCFGQ NDSNAVCSSG 120 LVESPELSRR WWIGPKATTS VMDRLIQALG YIKDFSRDKD MLIQIWVPVN RDGRRVLVTG 180 DQPFQLDLKC PRLAHYRDIS IDYEFPVEED SQENVGLPGR VFLGKVPEWT PDVQLFKREE 240 YPRVGHAQRY DVRGTFAVPV FDQGSRTCLG VIEVVLTTQK VKYRHELDSV CKALEEVDLR 300 GSKISNVRNT KTCDSYQVVL PEILEVLKSA CATHKLPLAQ TWVPCVQQGK EGLRHSDENL 360 LRCVSTVDSA CYIADPRIQG FHEACSEHHL LKGLGVVGRA FMTNQPCFSA DITSFSKTEY 420 PLSHYARIFS LQAAVAIRLR STCTGSTDFV LEFFLPRDCK SPEEHKRMLT SLSIIIQNVC 480 QTLRVVTEQE LEEEATSLSS KAAKNSDIRI NKEVPNLKYN SSVGPCEEGC SWTSSPTLVQ 540 ESCMTASAFQ NEKASELLYK RLPEFRQQLP EFVSGSGLSF DSTSGEGSAQ NLGRAGDKKR 600 MKAEKTITLQ ILQQYFAGSL KDAAKSLGVC PTTLKRICRQ HGIKRWPSRK IKKVGHSLQK 660 IRRVIDSVQG ASGALQIETF YSNFPELASP NVSRSNPTSD EQHPSLLNRQ HEGENVCPNG 720 SASKSPSSSC SQSSSSSQCC SSGTQPSPCT LHAAAPETAA VREESVNGVV KRVKSDAELL 780 VSNDGLTTTL PRSQSHASLS EHPKSECLPP TKDGPRVKVT FGEEKIRFRL QNHWGYQDLV 840 KEIARRFGID DPRGFQLKYL DDDLEWVLLT CDADLEECID VCRASQNQTI RLAFLCNSQH 900 QFGSSLGTKN PSGIRACIWG SLHLTSRRME SVACFGVIPL FFDAHCRLGR VSLSLVKNVC 960 PPVWSLSSLP CGPSLYGPLC VHPELRYLWR PSFRFREGPI PSLFSP

Sequence ? help Back to Top

Protein Sequence Length: 1006 aa Download sequence Send to blast

MDESVFPSSI VLNTTSDSSF MDLDDLLLEG CWLETTDGSE FFQHSPFNPN ALFEPSYLLP  60
QLEPNNGELI EGVSKESEGV SKESEVERKK SSLPENLSAS QYQGVQCFGQ NDSNAVCSSG  120
LVESPELSRR WWIGPKATTS VMDRLIQALG YIKDFSRDKD MLIQIWVPVN RDGRRVLVTG  180
DQPFQLDLKC PRLAHYRDIS IDYEFPVEED SQENVGLPGR VFLGKVPEWT PDVQLFKREE  240
YPRVGHAQRY DVRGTFAVPV FDQGSRTCLG VIEVVLTTQK VKYRHELDSV CKALEEVDLR  300
GSKISNVRNT KTCDSYQVVL PEILEVLKSA CATHKLPLAQ TWVPCVQQGK EGLRHSDENL  360
LRCVSTVDSA CYIADPRIQG FHEACSEHHL LKGLGVVGRA FMTNQPCFSA DITSFSKTEY  420
PLSHYARIFS LQAAVAIRLR STCTGSTDFV LEFFLPRDCK SPEEHKRMLT SLSIIIQNVC  480
QTLRVVTEQE LEEEATSLSS KAAKNSDIRI NKEVPNLKYN SSVGPCEEGC SWTSSPTLVQ  540
ESCMTASAFQ NEKASELLYK RLPEFRQQLP EFVSGSGLSF DSTSGEGSAQ NLGRAGDKKR  600
MKAEKTITLQ ILQQYFAGSL KDAAKSLGVC PTTLKRICRQ HGIKRWPSRK IKKVGHSLQK  660
IRRVIDSVQG ASGALQIETF YSNFPELASP NVSRSNPTSD EQHPSLLNRQ HEGENVCPNG  720
SASKSPSSSC SQSSSSSQCC SSGTQPSPCT LHAAAPETAA VREESVNGVV KRVKSDAELL  780
VSNDGLTTTL PRSQSHASLS EHPKSECLPP TKDGPRVKVT FGEEKIRFRL QNHWGYQDLV  840
KEIARRFGID DPRGFQLKYL DDDLEWVLLT CDADLEECID VCRASQNQTI RLAFLCNSQH  900
QFGSSLGTKN PSGIRACIWG SLHLTSRRME SVACFGVIPL FFDAHCRLGR VSLSLVKNVC  960
PPVWSLSSLP CGPSLYGPLC VHPELRYLWR PSFRFREGPI PSLFSP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019187241.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_019187242.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_019187243.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_019187244.1	0.0	PREDICTED: protein NLP5-like
TrEMBL	A0A1J6IGZ9	0.0	A0A1J6IGZ9_NICAT; Protein nlp4
STRING	XP_009759077.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein