PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000169.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 220aa    MW: 25327.1 Da    PI: 8.8655
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000169.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.2e-191259148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg WT+eEd+ l+++v+ +G g+W+tI+++ g+ R++k+c++rw +yl
  Itr_sc000169.1_g00002.1 12 RGFWTPEEDLTLKKCVETHGEGNWATISKKSGLMRSGKSCRLRWKNYL 59
                             799*******************************************97 PP
2Myb_DNA-binding48.52e-1565110148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg ++++E +l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  Itr_sc000169.1_g00002.1  65 RGMMSEDEKDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNFWNTHL 110
                              6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.488763IPR017930Myb domain
SuperFamilySSF466897.7E-309106IPR009057Homeodomain-like
SMARTSM007177.0E-161161IPR001005SANT/Myb domain
PfamPF002498.3E-171259IPR001005SANT/Myb domain
CDDcd001678.46E-131559No hitNo description
Gene3DG3DSA:1.10.10.607.9E-231566IPR009057Homeodomain-like
PROSITE profilePS5129418.50164114IPR017930Myb domain
SMARTSM007175.8E-1464112IPR001005SANT/Myb domain
PfamPF002497.0E-1465110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2267113IPR009057Homeodomain-like
CDDcd001671.00E-1068110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKAKEVKTGL KRGFWTPEED LTLKKCVETH GEGNWATISK KSGLMRSGKS CRLRWKNYLR  60
PNIKRGMMSE DEKDLIIRMH KLLGNRWSLI AGRLPGRTDN EVKNFWNTHL NKRSRRGKRM  120
KITPKDDDSI SASIPTQSME NTNLVEGSIK QEDEMDSIMN SWMEHMGIEN CNINSSISTN  180
NLPWIFEDVP LIPILDDVLL DAFQRTGDET LLDGIHPFLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24101135107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183912.11e-157PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF71e-59MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A328CVB81e-101A0A328CVB8_9ASTE; Uncharacterized protein
TrEMBLA0A484LL722e-98A0A484LL72_9ASTE; Uncharacterized protein
STRINGXP_009593348.19e-93(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.19e-62myb domain protein 82