PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000168.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 419aa MW: 47081.9 Da PI: 8.0418 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 337.5 | 2.4e-103 | 146 | 419 | 103 | 374 |
GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 le ++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s ++ l+ +g++L+++Ae+++vpf+f++ v+ Itr_sc000168.1_g00012.1 146 LETMKDEKRVHIIDFQIGQGSQWVTLIQAFAARPGGPPEIRITGIDDSTSAyaRRGGLSIVGKNLSNLAESFKVPFQFHA-VTMPG 230 799********************************************998899999************************.67788 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 + +le+L +++gEalaVn++++lhr++desv ++ +rd++L+lvksl+Pkvv++ve+e++ ns+ F rfleal+yysa+f+s Itr_sc000168.1_g00012.1 231 CKAQLENLTIQRGEALAVNFAFMLHRMPDESVGTSTdnHRDQLLRLVKSLNPKVVTLVEHESQSNSPAFYPRFLEALDYYSAMFES 316 8899**************************98665555************************************************ PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 l+++lpr++++ri+vE+++lgr++vn++aceg+er++rhe l kW++r+++aGF+p+pls+ ++ ++k+ll++++++ yr+ee++g Itr_sc000168.1_g00012.1 317 LDMTLPRNHKQRINVEQHCLGRDVVNIIACEGTERVKRHELLDKWKSRFRMAGFSPYPLSSLVNGTIKTLLENYSDK-YRLEERDG 401 ***************************************************************************55.******** PP GRAS 357 slvlgWkdrpLvsvSaWr 374 +l+lgW++r Lv+ +aW+ Itr_sc000168.1_g00012.1 402 ALYLGWRNRDLVASCAWK 419 *****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 8.4E-101 | 146 | 419 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 47.138 | 146 | 400 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MQASQRLRTS SMSNTMYYQP VQKAEPYCLP QFQNLDHQPS YTNSINGGNH AIHPHCASYY 60 TELSLVSRAH GLHNSSSTLS FSPNGNSVSQ QESQAYPSGL HQSPAPSYPI RESCFGGEVN 120 DLDFKDNVAR NRQLGGNDCG HPPRGLETMK DEKRVHIIDF QIGQGSQWVT LIQAFAARPG 180 GPPEIRITGI DDSTSAYARR GGLSIVGKNL SNLAESFKVP FQFHAVTMPG CKAQLENLTI 240 QRGEALAVNF AFMLHRMPDE SVGTSTDNHR DQLLRLVKSL NPKVVTLVEH ESQSNSPAFY 300 PRFLEALDYY SAMFESLDMT LPRNHKQRIN VEQHCLGRDV VNIIACEGTE RVKRHELLDK 360 WKSRFRMAGF SPYPLSSLVN GTIKTLLENY SDKYRLEERD GALYLGWRNR DLVASCAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-44 | 146 | 419 | 102 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019159584.1 | 1e-178 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_019159585.1 | 1e-178 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 1e-150 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A2K1XWW2 | 1e-165 | A0A2K1XWW2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s16230.1 | 1e-165 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-153 | GRAS family protein |
Publications ? help Back to Top | |||
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