PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000164.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-X1
Protein Properties Length: 851aa    MW: 93832.7 Da    PI: 8.3767
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000164.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.15.7e-06178196120
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                              CG H+C  lCH+GpCp+Cp+
  Itr_sc000164.1_g00012.1 178 CG-HRCLLLCHPGPCPSCPK 196
                              **.***************96 PP
2zf-NF-X1193.2e-06283302120
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                              CG+HkC++ CHeG+C++Cp+
  Itr_sc000164.1_g00012.1 283 CGRHKCERGCHEGECGKCPL 302
                              ******************95 PP
3zf-NF-X117.31e-05613631120
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                              C  H+C+ +CH+G+C pC++
  Itr_sc000164.1_g00012.1 613 CP-HPCSLPCHLGDCRPCKA 631
                              88.***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359069132IPR019786Zinc finger, PHD-type, conserved site
CDDcd060082.44E-7166214No hitNo description
PfamPF014220.0016178195IPR000967Zinc finger, NF-X1-type
SMARTSM004380.012178196IPR000967Zinc finger, NF-X1-type
CDDcd060081.39E-8220268No hitNo description
SMARTSM004380.0013230249IPR000967Zinc finger, NF-X1-type
PfamPF014220.0015232247IPR000967Zinc finger, NF-X1-type
CDDcd060081.88E-9273316No hitNo description
PfamPF014220.0015283301IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0026283302IPR000967Zinc finger, NF-X1-type
CDDcd060083.67E-7327370No hitNo description
PfamPF014220.0049337356IPR000967Zinc finger, NF-X1-type
SMARTSM004380.062337357IPR000967Zinc finger, NF-X1-type
SMARTSM0043828458479IPR000967Zinc finger, NF-X1-type
PfamPF0142219468478IPR000967Zinc finger, NF-X1-type
PfamPF01422110487496IPR000967Zinc finger, NF-X1-type
SMARTSM00438140487532IPR000967Zinc finger, NF-X1-type
PfamPF014220.066569579IPR000967Zinc finger, NF-X1-type
SMARTSM0043821569603IPR000967Zinc finger, NF-X1-type
SMARTSM004380.016613631IPR000967Zinc finger, NF-X1-type
PfamPF014221615630IPR000967Zinc finger, NF-X1-type
SMARTSM004385.5676697IPR000967Zinc finger, NF-X1-type
PfamPF014221.5678695IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MSSAADHHSL SSDSDSDAGT NSSDRHSDLS SSIFKSYLDL TGGGGNQHQH DLIKIQSFLT  60
SSRSGALSCL ICLERIRPVD PTWSCSSRCF AVFHLLCIQS WGVQASNLAA ARAASRAATT  120
TDNSLLWHCP KCRIEYPKYQ IPKTYYCFCG KLENPPHDPW VLPHSCGEIC GRPLKHNCGH  180
RCLLLCHPGP CPSCPKLVKS RCFCGAVEDM KRCGFKNFSC NGVCKKVLAC KTHRCNETCH  240
DGECPPCDAK AVYKCQCGKV KMERQCFERD FRCDNPCDEL LGCGRHKCER GCHEGECGKC  300
PLQGKRTCPC GKRVYEGMSC DVAAPVCGAT CDKMLSCGFH RCPERCHRGP CIETCRIVVT  360
KGCRCGSLRK QFGTVNAMPV SAAAVMVTAR LVLRCVIGSY GVGTTSAPLH VIGACAPCPV  420
MVTISCFCGE TYFEVPCGTE SAQKPPRCRK LCRMTTLCRH APTSKPHRCH YGACPQCRLI  480
CNEEYPCGHN CKLRCHGPIP PPLPEFTLKP KKKKSTHQNE PSPGTSCPPC PELVWKSCVG  540
NHIGAERMMV CSNRAEFACD NLCGNLLKCG NHYCTKVCHA IKLNHSSASE GHGRGEPCEK  600
CTLRCEKERE PTCPHPCSLP CHLGDCRPCK ALIKRSCHCG AMVHAFECIY YNSLSQKEQV  660
SARSCRGPCH RKLPYCAHLC PETCHPGECP SPDQCSKKVV IRCGCQTLKK EMLCKDVQAM  720
YRLNGCDPKD ISKSQYGLGL LPCNADCKSK VRVAEVELQL RKPKPPEITY AGLPSYGPLP  780
AGKGARCEKQ HNKAQKKTRP RAGRQENLET EEPYNRNLEG ASICRHYSNS VNISLLWLQR  840
LDVVIRSDER S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151623.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A484LMD40.0A0A484LMD4_9ASTE; Uncharacterized protein
STRINGSolyc06g051570.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors