PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000162.1_g00039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Dof | ||||||||
Protein Properties | Length: 224aa MW: 25122 Da PI: 9.1671 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 97 | 1.3e-30 | 31 | 88 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++cprC+s++tkfCy+nny+++qPry+C+aC+r+Wt+GG r++P+Gg + k +ks Itr_sc000162.1_g00039.1 31 ASRQCPRCHSDDTKFCYFNNYNMNQPRYYCRACKRHWTHGGIQRDIPIGGKSNKGRKS 88 6789***********************************************9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 4.7E-28 | 32 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.434 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-17 | 35 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEQGNGVGDF HPPLPSARRL RMMEYPGSHP ASRQCPRCHS DDTKFCYFNN YNMNQPRYYC 60 RACKRHWTHG GIQRDIPIGG KSNKGRKSTN RYENKRVQPS LPQLQPPCPQ ANVAPLAFGP 120 LALPPMVTPY RVENGYLNMV NPLRTIEPPY NSSQNAFQPT SHYDSRSHNL FLNNNDGASS 180 SNPIPLNASV NSSTTSGYTN IGWGSLIANP NDWLDFPHSF DPST |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019164591.1 | 1e-123 | PREDICTED: dof zinc finger protein DOF4.5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 5e-24 | Dof family protein |