PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000161.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 255aa    MW: 28886.1 Da    PI: 6.311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000161.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd++l  +v ++G  +W+  +r  g+ R++k+c++rw++yl
  Itr_sc000161.1_g00014.1 14 KGAWSEEEDDKLRAYVLRYGHWNWRQLPRFAGLSRCGKSCRLRWLNYL 61
                             79******************99************************97 PP
2Myb_DNA-binding55.31.6e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++++eEde +++++k+lG++ W++Ia+++  gR+++++k++w++ 
  Itr_sc000161.1_g00014.1  67 RGSFSQEEDEMILKLHKELGNK-WSAIAAKLS-GRSDNEIKNHWHTN 111
                              899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.15961IPR017930Myb domain
SuperFamilySSF466896.64E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002492.8E-131461IPR001005SANT/Myb domain
CDDcd001671.87E-81661No hitNo description
PROSITE profilePS5129425.83362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2565116IPR009057Homeodomain-like
SMARTSM007173.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.3E-1567111IPR001005SANT/Myb domain
CDDcd001671.98E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVRGPCVDKN GLKKGAWSEE EDDKLRAYVL RYGHWNWRQL PRFAGLSRCG KSCRLRWLNY  60
LKPGVRRGSF SQEEDEMILK LHKELGNKWS AIAAKLSGRS DNEIKNHWHT NLKKRLGLAL  120
HKKQDPEPSD ADQLDLQPSK NSQEPQATQY QKHQINTAII CDAVQAEISS HSHETSCSTE  180
VSSSTFTSSQ SFEEPLESFW NELLFSDPIY GGNGNSYYSS SESEEGLIIS SNSSTVEEDF  240
TLPYSTAYSV MILIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158785.15e-87PREDICTED: myb-related protein 308-like
TrEMBLA0A068UUA93e-73A0A068UUA9_COFCA; Uncharacterized protein
STRINGcassava4.1_023710m2e-65(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.19e-54myb domain protein 41