PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000161.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 263aa    MW: 30087.6 Da    PI: 4.8915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000161.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.3e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd++l  +v ++G  +W+  ++  g+ R++k+c++rw +yl
  Itr_sc000161.1_g00013.1 14 KGAWSEEEDDKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                             79******************99************************97 PP
2Myb_DNA-binding54.62.4e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg+++++Ede +++++k+lG++ W++Ia +++ gR+++++k++w+ +
  Itr_sc000161.1_g00013.1  67 RGSFSKDEDEMIIKLHKELGNK-WSAIAGKLP-GRSDNEIKNHWHAH 111
                              899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.639961IPR017930Myb domain
SuperFamilySSF466891.66E-3011108IPR009057Homeodomain-like
SMARTSM007178.2E-121363IPR001005SANT/Myb domain
PfamPF002491.9E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-221568IPR009057Homeodomain-like
CDDcd001675.59E-81661No hitNo description
PROSITE profilePS5129426.01862116IPR017930Myb domain
SMARTSM007171.4E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1567111IPR001005SANT/Myb domain
CDDcd001671.63E-1069112No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVRAPSVDKN GLKKGAWSEE EDDKLRAYVL RYGHWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LKPGIKRGSF SKDEDEMIIK LHKELGNKWS AIAGKLPGRS DNEIKNHWHA HLKKHLQTKQ  120
DPKIIRSEQK IINETAEYET FQKVKIAEDE SSIYDAISSY SQGASSSEES SCLSSISNSN  180
SSDLISCNTV WTVPEEGMMM TSSQSFEETF DCFWDDLLFD EVSFSSSESE GGFMSPTSMV  240
EEEFTLPYSL FGEDDVNFLN NFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26121185110B-MYB
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158785.11e-161PREDICTED: myb-related protein 308-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-56myb domain protein 15