PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000161.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 274aa MW: 30608.9 Da PI: 8.266 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l+ ++ q+G +W+ +++ g+ R++k+c++rw +yl Itr_sc000161.1_g00011.1 14 KGTWTVEEDKKLAAYISQYGCWNWRQLPKYAGLSRCGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 60.1 | 4.7e-19 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEd+l+++ ++qlG++ W++Ia++++ gRt++++k++w++ Itr_sc000161.1_g00011.1 67 RGNYTQEEDQLILKMHRQLGNK-WSAIAAHLP-GRTDNEIKNHWHT 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.878 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.66E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.36E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.618 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-17 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.59E-13 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 69 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 274 aa Download sequence Send to blast |
MVRTPCCDVS GLKKGTWTVE EDKKLAAYIS QYGCWNWRQL PKYAGLSRCG KSCRLRWMNY 60 LRPNIKRGNY TQEEDQLILK MHRQLGNKWS AIAAHLPGRT DNEIKNHWHT SLKKLTEQGY 120 ASSSSSPTQQ PRKKPSAGRT KRSRKQQPIP SASAPYSSSS AVSAHEILES SQWSSSEQAF 180 SSSHSSSPSI GTSSPNGGNT PEACADQNQT PPQIVGSTSE DESFWNEPFL LDNAFASGDD 240 FLDYRPASPF SQYGQFSSSC NLYDELVNEL MDYL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 9 | 114 | 2 | 106 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019158977.1 | 1e-152 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A2N9J0C4 | 4e-78 | A0A2N9J0C4_FAGSY; Uncharacterized protein | ||||
STRING | XP_009594011.1 | 2e-75 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28110.1 | 3e-55 | myb domain protein 41 |