PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000161.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 274aa    MW: 30608.9 Da    PI: 8.266
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000161.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT eEd++l+ ++ q+G  +W+  +++ g+ R++k+c++rw +yl
  Itr_sc000161.1_g00011.1 14 KGTWTVEEDKKLAAYISQYGCWNWRQLPKYAGLSRCGKSCRLRWMNYL 61
                             799*****************99************************97 PP

2Myb_DNA-binding60.14.7e-1967110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T+eEd+l+++ ++qlG++ W++Ia++++ gRt++++k++w++
  Itr_sc000161.1_g00011.1  67 RGNYTQEEDQLILKMHRQLGNK-WSAIAAHLP-GRTDNEIKNHWHT 110
                              899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.878961IPR017930Myb domain
SuperFamilySSF466891.66E-3011108IPR009057Homeodomain-like
SMARTSM007172.9E-111363IPR001005SANT/Myb domain
PfamPF002494.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-231568IPR009057Homeodomain-like
CDDcd001674.36E-91661No hitNo description
PROSITE profilePS5129426.61862116IPR017930Myb domain
SMARTSM007175.8E-1866114IPR001005SANT/Myb domain
PfamPF002495.2E-1767110IPR001005SANT/Myb domain
CDDcd001674.59E-1369112No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2669114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVRTPCCDVS GLKKGTWTVE EDKKLAAYIS QYGCWNWRQL PKYAGLSRCG KSCRLRWMNY  60
LRPNIKRGNY TQEEDQLILK MHRQLGNKWS AIAAHLPGRT DNEIKNHWHT SLKKLTEQGY  120
ASSSSSPTQQ PRKKPSAGRT KRSRKQQPIP SASAPYSSSS AVSAHEILES SQWSSSEQAF  180
SSSHSSSPSI GTSSPNGGNT PEACADQNQT PPQIVGSTSE DESFWNEPFL LDNAFASGDD  240
FLDYRPASPF SQYGQFSSSC NLYDELVNEL MDYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2991142106B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158977.11e-152PREDICTED: myb-related protein Myb4-like
TrEMBLA0A2N9J0C44e-78A0A2N9J0C4_FAGSY; Uncharacterized protein
STRINGXP_009594011.12e-75(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.13e-55myb domain protein 41