PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000159.1_g00052.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 1644aa MW: 180165 Da PI: 8.8982

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000159.1_g00052.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.4	1.5e-35	34	122	1	88
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ r+rdPvyG+v++i++lqq Itr_sc000159.1_g00052.1 34 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVITICYEAQSRLRDPVYGCVAHIFALQQ 119 7*********************9989******************************************************** PP DUF260 86 qle 88 q++ Itr_sc000159.1_g00052.1 120 QVR 122 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.26	33	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-35	34	122	IPR004883	Lateral organ boundaries, LOB
Pfam	PF14223	2.0E-16	393	521	No hit	No description
Pfam	PF13976	6.3E-11	735	797	IPR025724	GAG-pre-integrase domain
PROSITE profile	PS50994	18.101	806	972	IPR001584	Integrase, catalytic core
Gene3D	G3DSA:3.30.420.10	1.8E-22	809	965	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	1.97E-33	810	970	IPR012337	Ribonuclease H-like domain
Pfam	PF00665	1.6E-15	814	922	IPR001584	Integrase, catalytic core
SuperFamily	SSF56672	1.19E-40	1160	1383	No hit	No description
Pfam	PF07727	1.2E-94	1161	1404	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF56672	1.19E-40	1411	1594	No hit	No description
CDD	cd09272	7.81E-75	1487	1626	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 1644 aa Download sequence Send to blast
MSSNPSTSSA AAGGGAGPGG GGGGGSSGGG GGGPCGACKF LRRKCVPGCI FAPYFDSEQG 60 AAHFAAVHKV FGASNVSKLL LHIPVHKRLD AVITICYEAQ SRLRDPVYGC VAHIFALQQQ 120 VRPSTPXPPP SLSPPSLSLK NFDTRDTSLS PNSLLSYRDL SPSLVMSVRV SGVRHGILPF 180 VGKNSGASWQ VVNLQAELAY LQAHLATLEV PNAPPPAAQQ SQPQPPLFVP PPVLNIADLP 240 TGVPMMPATY DLSSLFDPMV QPAWAIQPRQ LDPRQLFGSA AATRVDMTSS SSSAAVSGGG 300 GDLQELAREL MHRHGSPTVP CTNAPSTLSC NDCIVESDSY SNLLIPFLRG QNLLGYIDGG 360 IPCPSPTLPS PATAGSSDAP AIPPTPNPAY SVWVQQDQSL LSMIISSLSD EVMHLAVGRT 420 TAKDVWDSVT SALASSTRAR CLSLLGQFQT LRQGNTSPAE YLGRAQMLVE ALSLAGRHLS 480 QDEQILYVLR GLRPEYRSVA SSLTVTGAEV TLPQLADMLM AQDFIQADDH IPAGAAPIDG 540 PAAFYAGRGR NNGGGGRNSS NGRGRHSRGR GGNGRGRGGG PRCQICRSHG HSALNCFRRY 600 DDRPAAHANV AISGETEASP PADAWIPDTG ASAHATPAAD MLQQSENYTG GDVLRVGNGT 660 GLDISRIGHA TIPSVSKSLK LSQILHVPNL CLPLLSVHKF TNDNNVFFEF HKNVFFVKDS 720 NTRDILLKGS VTGGLYKLLI PRVHSAYVTS RASSTVWHQR LGHPHNRVLH QILKNVPVTT 780 NKTSTEKLCS ACQLGKSSRF SLDRVHSTSE NVLDLVYTDI WGPSPCITHS GCRYFVLFVD 840 DFSRFTWFYP LRLKSDIYKT FDLFRVMVER RFSRSIKAIQ SDLGGEYCRL HKVFESLGII 900 HRQSCAYTHE QNGRVERRNR HIVETGLALL AESSSPQQYW DYAFETATYL INCLPSSAIN 960 FESPYFRIHK STPPYTFFRV FGCRCYPYLR PYNQHKIEYR STPCVFLGYP VSFRGYRCMD 1020 LTTGKIFICR HVCFDETVFP FASLQVASEQ TTPALPWGAS PVHVESQPVT TAVPLAHEPP 1080 SLSTEAPQST SEQCSSPIQN PTRTKSQHNT HVMRTRRKTQ GTDEQFYALT TSLDPTCYSQ 1140 AVGHPQWREA MDQEFNALLH NNTWLLVPAT PRMNIIGCKW VYRTKRKADG SIERHKARLV 1200 AKGFNQVAGE DFFDTFSPVV KPTTVRILFS LAVSNNWTLR QLDVHNAFLN GHLSETVYMK 1260 QPPGYEDPAH PGHVCHLQRS LYGLKQAPRA WFKRLHDFLT TTGFKSSKTD VSLFYYTAGK 1320 SKVFLLVYVD DIIMMGNDTA LITTLLDRLS TTFKIRDLGT PTFFLGIETV SVDGGLILSQ 1380 RRYMKDILVR AGMADCKPLS TPAAVTQSAT PSPDLSDNPT QYRRLVGALQ YLTITRPDLS 1440 YAVNRLCQFM HSPTVDHWGL LKRVLRYVKG TQDVGLRISA SASSDIHAYS DSDWAGCPVD 1500 RKSTSGYAVF FGDNLVSWLS RKQRTVARSS TEAEYKGLAD VSAEVTWVVS LLRELGLHSG 1560 KPATLWCDNL GATYLAANPV FHARTKHVEI DYHFVRDKVA SGDFVVSFVS TKDQLADIFT 1620 KPLPGPRFQT LRDKLHVVTI PPRA

Sequence ? help Back to Top

Protein Sequence Length: 1644 aa Download sequence Send to blast

MSSNPSTSSA AAGGGAGPGG GGGGGSSGGG GGGPCGACKF LRRKCVPGCI FAPYFDSEQG  60
AAHFAAVHKV FGASNVSKLL LHIPVHKRLD AVITICYEAQ SRLRDPVYGC VAHIFALQQQ  120
VRPSTPXPPP SLSPPSLSLK NFDTRDTSLS PNSLLSYRDL SPSLVMSVRV SGVRHGILPF  180
VGKNSGASWQ VVNLQAELAY LQAHLATLEV PNAPPPAAQQ SQPQPPLFVP PPVLNIADLP  240
TGVPMMPATY DLSSLFDPMV QPAWAIQPRQ LDPRQLFGSA AATRVDMTSS SSSAAVSGGG  300
GDLQELAREL MHRHGSPTVP CTNAPSTLSC NDCIVESDSY SNLLIPFLRG QNLLGYIDGG  360
IPCPSPTLPS PATAGSSDAP AIPPTPNPAY SVWVQQDQSL LSMIISSLSD EVMHLAVGRT  420
TAKDVWDSVT SALASSTRAR CLSLLGQFQT LRQGNTSPAE YLGRAQMLVE ALSLAGRHLS  480
QDEQILYVLR GLRPEYRSVA SSLTVTGAEV TLPQLADMLM AQDFIQADDH IPAGAAPIDG  540
PAAFYAGRGR NNGGGGRNSS NGRGRHSRGR GGNGRGRGGG PRCQICRSHG HSALNCFRRY  600
DDRPAAHANV AISGETEASP PADAWIPDTG ASAHATPAAD MLQQSENYTG GDVLRVGNGT  660
GLDISRIGHA TIPSVSKSLK LSQILHVPNL CLPLLSVHKF TNDNNVFFEF HKNVFFVKDS  720
NTRDILLKGS VTGGLYKLLI PRVHSAYVTS RASSTVWHQR LGHPHNRVLH QILKNVPVTT  780
NKTSTEKLCS ACQLGKSSRF SLDRVHSTSE NVLDLVYTDI WGPSPCITHS GCRYFVLFVD  840
DFSRFTWFYP LRLKSDIYKT FDLFRVMVER RFSRSIKAIQ SDLGGEYCRL HKVFESLGII  900
HRQSCAYTHE QNGRVERRNR HIVETGLALL AESSSPQQYW DYAFETATYL INCLPSSAIN  960
FESPYFRIHK STPPYTFFRV FGCRCYPYLR PYNQHKIEYR STPCVFLGYP VSFRGYRCMD  1020
LTTGKIFICR HVCFDETVFP FASLQVASEQ TTPALPWGAS PVHVESQPVT TAVPLAHEPP  1080
SLSTEAPQST SEQCSSPIQN PTRTKSQHNT HVMRTRRKTQ GTDEQFYALT TSLDPTCYSQ  1140
AVGHPQWREA MDQEFNALLH NNTWLLVPAT PRMNIIGCKW VYRTKRKADG SIERHKARLV  1200
AKGFNQVAGE DFFDTFSPVV KPTTVRILFS LAVSNNWTLR QLDVHNAFLN GHLSETVYMK  1260
QPPGYEDPAH PGHVCHLQRS LYGLKQAPRA WFKRLHDFLT TTGFKSSKTD VSLFYYTAGK  1320
SKVFLLVYVD DIIMMGNDTA LITTLLDRLS TTFKIRDLGT PTFFLGIETV SVDGGLILSQ  1380
RRYMKDILVR AGMADCKPLS TPAAVTQSAT PSPDLSDNPT QYRRLVGALQ YLTITRPDLS  1440
YAVNRLCQFM HSPTVDHWGL LKRVLRYVKG TQDVGLRISA SASSDIHAYS DSDWAGCPVD  1500
RKSTSGYAVF FGDNLVSWLS RKQRTVARSS TEAEYKGLAD VSAEVTWVVS LLRELGLHSG  1560
KPATLWCDNL GATYLAANPV FHARTKHVEI DYHFVRDKVA SGDFVVSFVS TKDQLADIFT  1620
KPLPGPRFQT LRDKLHVVTI PPRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-33	30	121	7	97	LOB family transfactor Ramosa2.1
5ly0_B	3e-33	30	121	7	97	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2	3	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	7e-48	LOB domain-containing protein 18