PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000159.1_g00033.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 212aa    MW: 24416.5 Da    PI: 9.2224
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000159.1_g00033.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74e-1880134256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +k+ ++++eq   Lee+F+ + +++  ++ +LA+kl+L  rqV vWFqNrRa+ k
  Itr_sc000159.1_g00033.1  80 KKKLRLNQEQSALLEECFKHHTTLTMGRKHDLATKLNLRPRQVEVWFQNRRARTK 134
                              678899***********************************************98 PP
2HD-ZIP_I/II115.92.4e-3780170191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl++eq++lLEe+F+++++L+  rK++la++L+l+prqv+vWFqnrRARtk+kq+E+d++ Lk+ +++l+ en+rL++e +e
  Itr_sc000159.1_g00033.1  80 KKKLRLNQEQSALLEECFKHHTTLTMGRKHDLATKLNLRPRQVEVWFQNRRARTKLKQTEVDCNLLKKYCESLNYENCRLRRELHE 165
                              59************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              Lr++ 
  Itr_sc000159.1_g00033.1 166 LRSSF 170
                              *9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1864137IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-1767135IPR009057Homeodomain-like
PROSITE profilePS5007115.88876136IPR001356Homeobox domain
SMARTSM003893.6E-1378140IPR001356Homeobox domain
PfamPF000462.1E-1580134IPR001356Homeobox domain
CDDcd000861.19E-1280137No hitNo description
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PfamPF021836.0E-7136168IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.5E-11136180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAKEDDQKLD LRLGLGHYSL PKEDNSPKKT SGFGVSLDLS FPSHSNDRSG DIIESSKTFE  60
VYGMESRNSY GTKNNNGVTK KKLRLNQEQS ALLEECFKHH TTLTMGRKHD LATKLNLRPR  120
QVEVWFQNRR ARTKLKQTEV DCNLLKKYCE SLNYENCRLR RELHELRSSF KFDRPPSTSF  180
SDQPPKAKTT ATCPSCEKNE TELVDTVLEL KN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884TKKKLRL
2128136RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158841.11e-111PREDICTED: homeobox-leucine zipper protein HOX19-like
SwissprotA2XE763e-41HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL43e-41HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A328DAR41e-63A0A328DAR4_9ASTE; Uncharacterized protein
STRINGXP_009630679.18e-51(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.19e-32HD-ZIP family protein