PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000159.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 351aa    MW: 39425.7 Da    PI: 6.3513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000159.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-091442129
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                             +g+WT+eEde+l +++k+ G g+W++ ++
  Itr_sc000159.1_g00008.1 14 KGPWTPEEDEKLTEYIKKNGHGSWRSLPK 42
                             79**********************99876 PP
2Myb_DNA-binding513.3e-16109154148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++++eE+el v+++ +lG++ W++Ia+ ++ gRt++++k+ w+++l
  Itr_sc000159.1_g00008.1 109 RGPFSPEEEELVVQLHGLLGNR-WAAIASQLP-GRTDNEIKNLWNTHL 154
                              89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-23544IPR009057Homeodomain-like
SuperFamilySSF466894.45E-8943IPR009057Homeodomain-like
PROSITE profilePS500909.0829103IPR017877Myb-like domain
SMARTSM007173.8E-1013105IPR001005SANT/Myb domain
PfamPF002491.9E-71442IPR001005SANT/Myb domain
CDDcd001675.88E-51643No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2386106IPR009057Homeodomain-like
SuperFamilySSF466896.53E-2190159IPR009057Homeodomain-like
PROSITE profilePS5129425.746104158IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-26107159IPR009057Homeodomain-like
SMARTSM007176.7E-15108156IPR001005SANT/Myb domain
PfamPF002497.5E-15109154IPR001005SANT/Myb domain
CDDcd001671.24E-10111154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRAPCCDKK GLKKGPWTPE EDEKLTEYIK KNGHGSWRSL PKFAVSQEEK LAYAIVWEEL  60
AVDMSSMGIF LVTVNSSDKT FAKMQVGLLR CGKSCRLRWT NYLRPDIKRG PFSPEEEELV  120
VQLHGLLGNR WAAIASQLPG RTDNEIKNLW NTHLKKRMIS MCIDPQTHKP SSDANGLMWT  180
MPTTPSARHM AQWESARLEA EARLSRESLH LVPSPTTVGS ETDFFLRMWN SEIGESFRKL  240
KKGEKADCQS PTSETSSSMK CGSASGTTEV DPTLTVHSAA DCNLNKDPEQ KSCKSYIEYP  300
LSEMSCTDEL DDSSESALQL LLDFPTHNDM SFLEHTDAYT IHPTPFSPKI L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22121585108B-MYB
1h88_C1e-21121584159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-21121584159MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-221215825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190148.10.0PREDICTED: myb-related protein 308-like
SwissprotQ9M2D91e-110MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A3Q7EKV61e-141A0A3Q7EKV6_SOLLC; Uncharacterized protein
TrEMBLA0A484LIX11e-141A0A484LIX1_9ASTE; Uncharacterized protein
STRINGSolyc01g094360.2.11e-142(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-112myb domain protein 17