PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000158.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 295aa    MW: 33024.2 Da    PI: 4.8434
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000158.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-1980128355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Itr_sc000158.1_g00016.1  80 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 128
                              9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.7E-3979142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3279137IPR001471AP2/ERF domain
PROSITE profilePS5103223.77579136IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2279137IPR016177DNA-binding domain
PfamPF008475.9E-1280128IPR001471AP2/ERF domain
PRINTSPR003677.5E-128091IPR001471AP2/ERF domain
CDDcd000185.38E-3280137No hitNo description
PRINTSPR003677.5E-12102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MCGGAILFDL IPRNNNGGRR ISSDDLWPSS ADFWPNSPDL KGTASNCSAQ SGCPSLKRCD  60
RCTGDERPER AKKRQRKNLY RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD  120
REARKIRGKK AKVNFPNEDF DDYNTSQPRF QNAGTGSSFA YPVDSYYNNA YYSINRGEPA  180
MGYSAQNEEA SGSVSGSENG YYSCSQTGNE GSLMNQIKEE NEEDKEEEKA VHVANKAEED  240
NQVQKLSEEL MAYESYMKFY EIPYLDGQSA APPEPIVGGG SLELWSFDDV NPSCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21801381574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163870.10.0PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A328DCW92e-90A0A328DCW9_9ASTE; Uncharacterized protein
TrEMBLA0A484K8F72e-90A0A484K8F7_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000813228e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-33ethylene-responsive element binding protein