PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000157.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26786.9 Da PI: 5.2546 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.8e-20 | 77 | 128 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd k +r++lg+f+taeeAa a+++a+++++g+ Itr_sc000157.1_g00015.1 77 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFDTAEEAAMAYDKAALRIRGH 128 8********.**********3...2234**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.44E-30 | 76 | 135 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-32 | 76 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.026 | 77 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-15 | 77 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-36 | 77 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-24 | 77 | 136 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-11 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGSVEREKES ASSSDAILEN VWANFIAKNE SKESREDYEN WDEILHRLPS LEEELQASIN 60 GGPKSSSERV KVERRKHYRG VRRRPWGKYA AEIRDSSRKG ARVWLGTFDT AEEAAMAYDK 120 AALRIRGHKA YLNFPLQSTV ADARGICCNP NHELSGNCSF IGSCFGHGEI TCDSRKRVGR 180 EWDIFEDSSC MITQPAQKIK MQSQTCLEEP LETSFSDIVE FQDLGSDYLE YLLLTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-29 | 76 | 137 | 1 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 83 | RRKHYRGVRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019162287.1 | 1e-134 | PREDICTED: ethylene-responsive transcription factor ERF105 | ||||
Swissprot | O49515 | 7e-36 | ERF91_ARATH; Ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | A0A1S4BF42 | 2e-66 | A0A1S4BF42_TOBAC; ethylene-responsive transcription factor ERF091-like | ||||
STRING | XP_009776179.1 | 9e-67 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11237 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 3e-28 | ERF family protein |