PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000157.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 177aa MW: 19925.4 Da PI: 7.1134 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.9e-19 | 15 | 69 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++t++q++ Le F+ n++++a+++ +LA++lgL+ rq+ +W+qN+Ra+ k Itr_sc000157.1_g00005.1 15 CHKKRLTQDQVRLLEGSFNVNNKLDADSKSQLANQLGLPPRQIAIWYQNKRARSK 69 567789***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 108.3 | 5.4e-35 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +k+rl+++qv+lLE sF+ ++kL+ + K++la++Lgl prq+a+W+qn+RAR k++ lE+d++aL++++d++ ++nerL++eve+L Itr_sc000157.1_g00005.1 16 HKKRLTQDQVRLLEGSFNVNNKLDADSKSQLANQLGLPPRQIAIWYQNKRARSKSQSLEVDHKALHERLDEVLSDNERLRREVERL 101 69************************************************************************************ PP HD-ZIP_I/II 88 reelke 93 ree+++ Itr_sc000157.1_g00005.1 102 REEVQK 107 ***987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.5E-15 | 14 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.1E-17 | 15 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.2E-16 | 16 | 69 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.17E-15 | 16 | 72 | No hit | No description |
PROSITE profile | PS50071 | 15.127 | 17 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-18 | 18 | 76 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.8E-5 | 42 | 51 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.8E-5 | 51 | 67 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MDNFQSLTRK PLFKCHKKRL TQDQVRLLEG SFNVNNKLDA DSKSQLANQL GLPPRQIAIW 60 YQNKRARSKS QSLEVDHKAL HERLDEVLSD NERLRREVER LREEVQKAQE MLQLATAAAT 120 PYSSLSLSCS SCDEAAGSLG LLHGSSKELY ACLLDDHESQ FGTSGDLHNF FAPPALS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019162286.1 | 2e-96 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A1U7YMN8 | 5e-67 | A0A1U7YMN8_NICSY; homeobox-leucine zipper protein ATHB-52-like | ||||
STRING | XP_009800499.1 | 9e-68 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 9e-28 | homeobox protein 52 |