PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000157.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 300aa MW: 33538.2 Da PI: 8.4706

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000157.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.4	3.4e-33	57	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lp+G++F+P+d+e++ e+L++k +++ ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r++ Itr_sc000157.1_g00002.1 57 LPAGVKFDPSDQEIL-EHLQAKSVSDSrklhplIDEFIPtIEGEnGICYTHPEKLP-GVNKDGQVRHFFHRPSKAYTTGTRKRRKV 140 799**********.677777555553776553333333665557******.667777888**************74 PP NAM 79 k......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + + +W++tgk+++v+ + +l g kk+Lv+y gr++k+ekt+Wvmh+y+l Itr_sc000157.1_g00002.1 141 HtdadggETRWHKTGKTRAVFG-EANLRGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 197 4456555778********.999*******66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-37	52	216	IPR003441	NAC domain
PROSITE profile	PS51005	33.712	57	216	IPR003441	NAC domain
Pfam	PF02365	2.3E-14	58	197	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MTWCNNSAAG DQPPLQIIHS DDDNAAVKTS RIRSVTCPSC GHSIQLESQG IHDLPGLPAG 60 VKFDPSDQEI LEHLQAKSVS DSRKLHPLID EFIPTIEGEN GICYTHPEKL PGVNKDGQVR 120 HFFHRPSKAY TTGTRKRRKV HTDADGGETR WHKTGKTRAV FGEANLRGYK KILVLYTNYG 180 RQRKPEKTNW VMHQYHLGHD EEEKDGELVV SKVFYQTQPR QCGSSSSSSS KQPLNKTSSV 240 SFSGRDNNNF VDYYNPPFIS SYHVGSQNPD AQPHQLIPSL VVHADTSSFI NLSSNSSKDK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019162990.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Refseq	XP_019162991.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Refseq	XP_019162992.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-118	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A314KJF7	1e-149	A0A314KJF7_NICAT; Nac domain-containing protein 73
STRING	XP_009797428.1	1e-149	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-118	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]