PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000156.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 278aa MW: 30383 Da PI: 6.9869

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000156.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.3	2.2e-35	51	108	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k + lkcprC s+ntkfCyynny+ sqPr+fCk+C+r+Wt+GG+lrnvPvGg+ rknk+ Itr_sc000156.1_g00005.1 51 KAEPLKCPRCASENTKFCYYNNYNKSQPRHFCKGCKRHWTEGGTLRNVPVGGS-RKNKR 108 56889*********************************************976.66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.4E-31	54	107	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-22	55	108	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.804	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGLSTKQVSG GDHHHHQHGI IEWENPQTPG GSTRLDLPTV QPQSVQPQPQ KAEPLKCPRC 60 ASENTKFCYY NNYNKSQPRH FCKGCKRHWT EGGTLRNVPV GGSRKNKRLK TPPNPTAVKS 120 SSPPAATCDN QKPVFSGENK NHAPSLFFPA AIQADPVIGA AAAAFNIGST PTMVLHDDQD 180 TTKLLPFSFS SFFDPISCSI PSFNTQSSSN NAYSDIIVGE LDNVEESTIT TVMPFTSSAV 240 ISQPWDMANY WSLSEIDSLV SADLNIPWDD LEIKPKGK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170133.1	1e-125	PREDICTED: dof zinc finger protein MNB1A-like isoform X1
Refseq	XP_019170134.1	1e-125	PREDICTED: dof zinc finger protein MNB1A-like isoform X2
TrEMBL	A0A1S3Y0X7	3e-58	A0A1S3Y0X7_TOBAC; dof zinc finger protein PBF-like
TrEMBL	A0A1U7X1S1	3e-58	A0A1U7X1S1_NICSY; dof zinc finger protein PBF-like
STRING	XP_009780420.1	6e-59	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	5e-30	Dof family protein