PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000150.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 162aa    MW: 18145.4 Da    PI: 9.3338
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000150.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-171766255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Itr_sc000150.1_g00020.1 17 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDIAVYYLRG 66
                             59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.9831774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-291775IPR001471AP2/ERF domain
SMARTSM003801.4E-361780IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-201875IPR016177DNA-binding domain
CDDcd000185.70E-261876No hitNo description
PRINTSPR003673.8E-111829IPR001471AP2/ERF domain
PfamPF008479.7E-111866IPR001471AP2/ERF domain
PRINTSPR003673.8E-115676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEIEGQVGGG KRKNERPYKG IRMRKWGKWV AEIREPNKRS RIWLGSYSTP VAAARAYDIA  60
VYYLRGPSAR LNFPELLAGD GGGLSDLSAA SIRKKAIEVG SRVDATQSSM GVEDDEDRRR  120
HGRENSPATA QTPPGILKAC WFEEKPDLNK KPEPEDPDVD YW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1418751573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183691.11e-103PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotO221743e-50ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLG9IZQ56e-77G9IZQ5_SOLTU; Dehydration-responsive element-binding protein DREB3
STRINGPGSC0003DMT4000102282e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.12e-44DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]