PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000150.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 388aa    MW: 42624.2 Da    PI: 9.3026
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000150.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.52.1e-201762147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Itr_sc000150.1_g00008.1 17 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 62
                             79******************************.***********985 PP

2Myb_DNA-binding52.51.1e-1671113347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Itr_sc000150.1_g00008.1  71 AFTPEEDDTIIRAHARFGNK-WATIARLLA-GRTDNAIKNHWNST 113
                              79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.761267IPR017930Myb domain
SuperFamilySSF466893.15E-3214110IPR009057Homeodomain-like
SMARTSM007175.7E-181665IPR001005SANT/Myb domain
PfamPF002493.9E-201762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-261870IPR009057Homeodomain-like
CDDcd001674.61E-171961No hitNo description
SMARTSM007171.5E-1468116IPR001005SANT/Myb domain
PROSITE profilePS5129420.91769118IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2371117IPR009057Homeodomain-like
CDDcd001671.37E-1171114No hitNo description
PfamPF002492.6E-1471113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MASISPNGRR KDMDRVKGPW SPEEDELLQQ LVQKHGPRNW SLISKSIPGR SGKSCRLRWC  60
NQLSPQVEHR AFTPEEDDTI IRAHARFGNK WATIARLLAG RTDNAIKNHW NSTLKRKCSS  120
MSADEGNDLA DRLQQQPLKR SVSAGAAVTL SGLHFNPGSP SGSDVSESSL PVMSPSHVFK  180
PIARTGGVLP PPVETPPPPP PPVNDPPTSL SLSLPGVDSS SDVSPRLTES TQPISPIQLF  240
SSAIHTPPPP PPLPVPFQQP LEKFDLGGGA PPPMACPIPP KEAVPAPAQQ DRVFLPFSQE  300
LLAVMQDMIK TEVRNYMMGV EQQQQPQPSQ QQRYHQQHQQ QQQFQFQQQQ QLQNGIGRGM  360
CLQRATSNDG LRYAAAATVN RVGVNRLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-40161173104C-Myb DNA-Binding Domain
1msf_C3e-40161173104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158063.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231603e-94MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A484LGT61e-174A0A484LGT6_9ASTE; Uncharacterized protein
STRINGXP_009588514.11e-135(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-80myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]