PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000145.1_g00028.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 342aa    MW: 37304.2 Da    PI: 8.9347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000145.1_g00028.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-173277147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             rg W ++Ed +l+++v+++G ++W+ Ia+ ++ gR++k+c++rw++ 
  Itr_sc000145.1_g00028.1 32 RGHWKPDEDAKLKELVALHGAHNWNFIAHSLP-GRSGKSCRLRWYNQ 77
                             899*****************************.************96 PP
2Myb_DNA-binding543.9e-1784130148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              r  +T+eE+e+lv+a k++G++ W+tIar    gRt++ +k++w+ +l
  Itr_sc000145.1_g00028.1  84 RSTFTAEEEERLVEAQKMYGNK-WATIARLYFPGRTDNAVKNHWHVLL 130
                              678*******************.******8766***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6892782IPR017930Myb domain
SuperFamilySSF466891.12E-2731126IPR009057Homeodomain-like
SMARTSM007172.4E-153180IPR001005SANT/Myb domain
PfamPF002494.7E-173278IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-253385IPR009057Homeodomain-like
CDDcd001674.80E-153576No hitNo description
SMARTSM007173.0E-1483132IPR001005SANT/Myb domain
PROSITE profilePS5129420.02283134IPR017930Myb domain
PfamPF002492.8E-1384130IPR001005SANT/Myb domain
CDDcd001671.17E-1186130No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1886133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MITRTNNGNE APEIYDGDGD SGGGNSSRFI PRGHWKPDED AKLKELVALH GAHNWNFIAH  60
SLPGRSGKSC RLRWYNQLDP KLNRSTFTAE EEERLVEAQK MYGNKWATIA RLYFPGRTDN  120
AVKNHWHVLL ARNERWWRQQ QQQIGEVSAA SFTSTCGGYK RMKLTNAINN TSTFNAAVTE  180
STVDSKSTCR RNPMPPDFQT PGAVTGSLSS SERKDRQCNS PLPILSTPIT DIGLSITGSS  240
SSGTEEGKGR QCYSPLSILT TPIATEIGLS ITTGSSSSSR VEEGKSRRGG VGWWGGQSES  300
SNSEVSGASE SVANLKGTNQ KTDQGNQLNK IAFYDFLGMG AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28321327106B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186374.10.0PREDICTED: transcription factor MYB44-like
TrEMBLA0A328E1R63e-61A0A328E1R6_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-51myb domain protein 105