PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000144.1_g00024.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 369aa    MW: 40401.8 Da    PI: 6.7724
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000144.1_g00024.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.52.9e-07155175323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C++Cgk F+r  nL+ H+r H
  Itr_sc000144.1_g00024.1 155 CEICGKGFKRDANLRMHMRAH 175
                              *******************99 PP
2zf-C2H213.60.0002240263123
                              EEETTTT.EEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                              y+C+ C+ ksFs   +Lk+H++ +
  Itr_sc000144.1_g00024.1 240 YSCNRCNkKSFSVMADLKSHMKHC 263
                              99*******************987 PP
3zf-C2H211.20.0012272287621
                              TTEEESSHHHHHHHHH CS
                  zf-C2H2   6 CgksFsrksnLkrHir 21 
                              C +sFsrk+ L +Hi 
  Itr_sc000144.1_g00024.1 272 CRTSFSRKDKLFSHIA 287
                              99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.1E-6150176No hitNo description
SMARTSM003550.0035153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.071153180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-6154193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SMARTSM0035548202235IPR015880Zinc finger, C2H2-like
SMARTSM003559240262IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSFIGDLRHT PAATKPPGIA TASGGADPRV PLLNLSAVQD RVDSLHKFLC DSVNSNTLLG  60
KHETDRVSAE ITAAIHQIIV NGVALLASTQ AAEGTDSKCS NLTSSSKLLC SETALLAPKE  120
RAGEAGPEEE GGGGEDSEII ELDAVELLAE HIHLCEICGK GFKRDANLRM HMRAHGNQFK  180
TPEALAKPEK CSELRSGRPA IFSCPFPGCS RNKSHNKFRP LKSAICVKNH FKRSHCPKMY  240
SCNRCNKKSF SVMADLKSHM KHCGISKWKC SCRTSFSRKD KLFSHIALFE GHMPTIETEE  300
AKETADMAAR EVEEGIANKD TEMAENSQSD NSLFDRLLDD FSSIENFCFQ DPLFSASPDA  360
NVMDAFFSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183030.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A484N0001e-153A0A484N000_9ASTE; Uncharacterized protein
STRINGXP_009626824.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-74C2H2 family protein