PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000141.1_g00055.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 154aa    MW: 17480.8 Da    PI: 4.8539
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000141.1_g00055.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.31.6e-133584554
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54
                             ++ +r+++NRe+ArrsR +K++ ++eL+  v +LeaeN++   +l   + 
  Itr_sc000141.1_g00055.1 35 RKRKRMISNRESARRSRMKKQKLLDELTAQVSQLEAENSQILANLGVVTR 84
                             6789**********************************998888765555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.1E-122877No hitNo description
SMARTSM003382.6E-173195IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.4383384IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-113584No hitNo description
PfamPF001701.7E-103578IPR004827Basic-leucine zipper domain
CDDcd147025.71E-153684No hitNo description
PROSITE patternPS0003603853IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MACSSGNCSS GSSEVKLESA KSREDSQMMM MMDQRKRKRM ISNRESARRS RMKKQKLLDE  60
LTAQVSQLEA ENSQILANLG VVTRLRLEVE AENSILMAQV AELNNRLRSL NEILSNMSPS  120
NSSSWDYDDD IDDDFFKPWN IIPLIASPNA LVEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13455RKRKRMISNRESARRSRMKKQK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177152.11e-69PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L52e-35BZP44_ARATH; bZIP transcription factor 44
TrEMBLB9H4F33e-40B9H4F3_POPTR; BZIP family protein
STRINGPOPTR_0005s25290.15e-41(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.13e-27G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]