PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000138.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 297aa    MW: 30907 Da    PI: 7.1444
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000138.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.41.3e-21150199255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +grW+AeIrdp   +k++r++lg+f+tae Aa+a+++a+++++g
  Itr_sc000138.1_g00017.1 150 QYRGVRRRP-WGRWAAEIRDP---NKSARVWLGTFDTAEAAAEAYDQAALRFRG 199
                              69*******.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-33149208IPR001471AP2/ERF domain
PfamPF008471.5E-15150199IPR001471AP2/ERF domain
PROSITE profilePS5103225.818150207IPR001471AP2/ERF domain
SMARTSM003809.7E-38150213IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22150208IPR016177DNA-binding domain
CDDcd000182.01E-21150209No hitNo description
PRINTSPR003674.5E-11151162IPR001471AP2/ERF domain
PRINTSPR003674.5E-11173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MPNPSGERRS SKDAAAYSEM VSPLLTAGIN REREMSVMVS ALAHVVAGDD VITSGGAGDG  60
ILSLTSSLLD SVAANSGSSS GGLSSSSTSV CSSYYHHDDL SLLGASTLGS SPSESGGRIA  120
RTRSGPPETA TFIYTPTTTH HNAQVEPGRQ YRGVRRRPWG RWAAEIRDPN KSARVWLGTF  180
DTAEAAAEAY DQAALRFRGS KAKLNFPENV SVLPPPPPPS SSSSARVSSP ASLPQTPPYS  240
NFGSPAVVNR PGSLLEQGIC SPESLSSMLP SAQPPVRFGH GGSQSSGTEY PAASWSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22148211367ATERF1
3gcc_A1e-22148211367ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177270.11e-125PREDICTED: ethylene-responsive transcription factor ABR1-like
RefseqXP_019177271.11e-125PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0B2RP723e-43A0A0B2RP72_GLYSO; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0R0JXR93e-43A0A0R0JXR9_SOYBN; Uncharacterized protein
STRINGGLYMA05G32040.15e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-25related to AP2 6