PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000135.1_g00022.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 1023aa MW: 115757 Da PI: 5.2431

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000135.1_g00022.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.7	8.6e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++ Itr_sc000135.1_g00022.1 5 KQKWTPEEEAALKAGVLRHGQGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55 79*********************************88*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.31	1	63	IPR017930	Myb domain
SuperFamily	SSF46689	5.38E-14	2	59	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.7E-13	4	56	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-6	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-7	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	5.95E-17	6	56	No hit	No description
SMART	SM00526	5.2E-12	118	183	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.58E-15	119	198	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	22.395	120	188	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.6E-14	121	189	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.2E-7	125	181	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence Send to blast
MGAPKQKWTP EEEAALKAGV LRHGQGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA 60 NGLGSREKAR LALKRMHQTP KQNESSMALA NVAQSDEDTS ETKPNATSSD SPRPGGSRRS 120 IIRLDNLIMD AINNLKEPGG SNKTAISAYI EDQYWAPPNF KRLLSAKLKY LTATEKLVKM 180 KRKYRIATTS TLSERRRNPP ISLLEGRQKL SPKPDSDDID MLTKSQIDSE LSKMRSMTPE 240 EAAAAAAQAV AEAEAAIAEA EEAAREAEAA EAEAEAAQAF AEAAMKTLQW RSTPRTITRF 300 RQLSDDIHPT LRTATNNFEW SSVVSRLPSF NQLVAFAVEK APPARETIVA FFKECDRVSA 360 MEGDLEDNTA LHARIQQLER ERDDLHKDIE QLCMQQAGPA YLGVATRMHL HRTAALEQEI 420 ENLKKKLAAC TRENQNLQEE LSEAYHVKSQ LADLHSAEVS KNIEAEKQLK FFQGCVASAF 480 AERDNAVMEA EKAKEQEESN SRGFYQLQER VEKISCELLE EKALTATLQS DLEKQSSQLE 540 VFREVVNKFY DIRQHALDDI EDTCLEDKCE CLLHDSLEMW SFNVDGETST STYISSLEEE 600 VETLRSSLDN LRNKLLVGLE IENHLKKKVR DLEKQKILSE EKIMAEISML RDFHSQHRLN 660 ITKLLDEGFS ELKSDLHMVE EKFRQLDMSS RGNDLISPQV DDVKESECRD VHINTESSAD 720 LSTTRNDPNL STTTAMGTSD TSEAFTMALQ EKVAALLLLS QEEERHLLER NMNAALHKKL 780 EELQRNLLQV TNEKVKALME LAQLRQEYQL LLQKDDQEIK QGKPHSEIGG KKTVQDGEGR 840 FKNLLKKTYL KRWVGDSEGN DAESYLSSEV NSIGFARFVQ IYSFFLRTSD TVMKIENATL 900 RESLESMEHL TSSIRRLRHS LLKVKECIDT RTNNSSESLE NIIYEAKLLK TALGTSLPVS 960 WSAESDTRYS THNKETSDDD RTHTSKEKID FVSAAGFEMV ELLVFVAQLL KENTCRGEEA 1020 IVS

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence Send to blast

MGAPKQKWTP EEEAALKAGV LRHGQGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGLGSREKAR LALKRMHQTP KQNESSMALA NVAQSDEDTS ETKPNATSSD SPRPGGSRRS  120
IIRLDNLIMD AINNLKEPGG SNKTAISAYI EDQYWAPPNF KRLLSAKLKY LTATEKLVKM  180
KRKYRIATTS TLSERRRNPP ISLLEGRQKL SPKPDSDDID MLTKSQIDSE LSKMRSMTPE  240
EAAAAAAQAV AEAEAAIAEA EEAAREAEAA EAEAEAAQAF AEAAMKTLQW RSTPRTITRF  300
RQLSDDIHPT LRTATNNFEW SSVVSRLPSF NQLVAFAVEK APPARETIVA FFKECDRVSA  360
MEGDLEDNTA LHARIQQLER ERDDLHKDIE QLCMQQAGPA YLGVATRMHL HRTAALEQEI  420
ENLKKKLAAC TRENQNLQEE LSEAYHVKSQ LADLHSAEVS KNIEAEKQLK FFQGCVASAF  480
AERDNAVMEA EKAKEQEESN SRGFYQLQER VEKISCELLE EKALTATLQS DLEKQSSQLE  540
VFREVVNKFY DIRQHALDDI EDTCLEDKCE CLLHDSLEMW SFNVDGETST STYISSLEEE  600
VETLRSSLDN LRNKLLVGLE IENHLKKKVR DLEKQKILSE EKIMAEISML RDFHSQHRLN  660
ITKLLDEGFS ELKSDLHMVE EKFRQLDMSS RGNDLISPQV DDVKESECRD VHINTESSAD  720
LSTTRNDPNL STTTAMGTSD TSEAFTMALQ EKVAALLLLS QEEERHLLER NMNAALHKKL  780
EELQRNLLQV TNEKVKALME LAQLRQEYQL LLQKDDQEIK QGKPHSEIGG KKTVQDGEGR  840
FKNLLKKTYL KRWVGDSEGN DAESYLSSEV NSIGFARFVQ IYSFFLRTSD TVMKIENATL  900
RESLESMEHL TSSIRRLRHS LLKVKECIDT RTNNSSESLE NIIYEAKLLK TALGTSLPVS  960
WSAESDTRYS THNKETSDDD RTHTSKEKID FVSAAGFEMV ELLVFVAQLL KENTCRGEEA  1020
IVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165518.1	0.0	PREDICTED: uncharacterized protein LOC109161532 isoform X1
TrEMBL	A0A2G3AVM6	0.0	A0A2G3AVM6_CAPCH; Telomere repeat-binding factor 2
STRING	XP_009606148.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7683	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	6e-92	telomere repeat binding factor 1