PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000135.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 27978.3 Da PI: 7.5616 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00052 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F + L H +H Itr_sc000135.1_g00014.1 104 YKCSVCDKAFASYQALGGHKASH 126 9***********99998888877 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 159 | 181 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ksF++ L H r+H Itr_sc000135.1_g00014.1 159 HECSICHKSFPTGQALGGHKRRH 181 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.58E-10 | 104 | 126 | No hit | No description |
Pfam | PF13912 | 9.4E-13 | 104 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.4E-4 | 104 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 104 | 126 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 104 | 126 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.58E-10 | 154 | 181 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.7E-4 | 157 | 181 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.2E-13 | 159 | 183 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.039 | 159 | 181 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.93 | 159 | 186 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 161 | 181 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MALEALKAAA AVAPKFPPPL GEVDVHSFKK RRSKRPRTES PQPESEEEYL AACLVMLARG 60 EEPRRRILAG EEAEKTEEKK SEDTPPPPPP RSPPKAVLET VQEYKCSVCD KAFASYQALG 120 GHKASHRKYA ATVSDDNNHP STSSSVAAAG ALNPSGKPHE CSICHKSFPT GQALGGHKRR 180 HYEGKLGGGG SRSGTSSDSV VISSRTPLEF DLNELPPSPE LDLRLSIDCG SGQPNQPSTG 240 DHEVESPMPA KKPRLSFPET A |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 28 | 33 | KKRRSK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165267.1 | 1e-118 | PREDICTED: zinc finger protein ZAT6-like | ||||
TrEMBL | A0A484LPJ8 | 3e-80 | A0A484LPJ8_9ASTE; Uncharacterized protein | ||||
STRING | XP_009772006.1 | 1e-69 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA735 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04340.1 | 1e-39 | zinc finger of Arabidopsis thaliana 6 |