PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000135.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 19880.5 Da PI: 7.3081 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.3 | 3.2e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl+ eA+ r+ +Pv+Gavg+++ Itr_sc000135.1_g00013.1 2 SCNGCRILRKGCNDNCILRQSLqgiesPQAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLLEACGRTVNPVHGAVGLLW 87 6************************************************************************************* PP DUF260 82 klqqqleqlkaelall 97 +++++++q+++e++l+ Itr_sc000135.1_g00013.1 88 TGNWHVCQAAVEAVLR 103 **********998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.135 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-26 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSCNGCRILR KGCNDNCILR QSLQGIESPQ AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLLE ACGRTVNPVH GAVGLLWTGN WHVCQAAVEA VLRGGTPPRP LPEFTIPTPS 120 QESDEAAGDL DLGLTTAARM TGNRRVEKKR RADTPSEESE ISTLESGFAY HQSSETNLLR 180 LFF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165269.1 | 1e-120 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 7e-62 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | M1CF43 | 1e-86 | M1CF43_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400066165 | 2e-87 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-64 | LOB domain-containing protein 38 |