PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000134.1_g00057.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 215aa    MW: 23706 Da    PI: 4.276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000134.1_g00057.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182172156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++y+GVr +k +g+Wv+e+r p++   r r++lg+f+++e+Aa+a +aa  +l+ge
  Itr_sc000134.1_g00057.1 21 CKYRGVRKRK-WGKWVSEVRLPNS---RERIWLGSFDSPEKAARAFDAALFCLRGE 72
                             79*****999.*******999833...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.9E-122172IPR001471AP2/ERF domain
CDDcd000186.85E-302181No hitNo description
PROSITE profilePS5103222.012279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-292280IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-202280IPR016177DNA-binding domain
SMARTSM003805.4E-322285IPR001471AP2/ERF domain
PRINTSPR003677.3E-102334IPR001471AP2/ERF domain
PRINTSPR003677.3E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVKPKRQTAE IKNEPDSSLS CKYRGVRKRK WGKWVSEVRL PNSRERIWLG SFDSPEKAAR  60
AFDAALFCLR GESANFNFPD NPPDIVNGRS LTREQIQIAA VRFANSAAPI SNSGSGRPEN  120
SDSSSLLNAD APSPPSPSDG SGSVQTCSEM TETSLDSDFL DLCSYIGMED NVANFGIFPG  180
FDDFSGEYYY VSPDIDDVAE NYDGFSSQDS FLWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1622791472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193989.11e-140PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ84QC22e-58ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1J6KQS73e-71A0A1J6KQS7_NICAT; Ethylene-responsive transcription factor erf017
TrEMBLA0A1S3XUX53e-71A0A1S3XUX5_TOBAC; ethylene-responsive transcription factor ERF017-like
STRINGXP_009624342.19e-73(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-60ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]