PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000134.1_g00056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 172aa MW: 18978.3 Da PI: 9.6308 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.7e-20 | 19 | 69 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++kGVr +k +g+WvAe+r p++ r r++lg+++taeeAa+a++aa+ +l+g+ Itr_sc000134.1_g00056.1 19 KFKGVRMRK-WGKWVAEVRQPNS---RDRIWLGSYDTAEEAARAYDAAAVSLRGH 69 79*****99.*******888732...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-31 | 19 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-14 | 19 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.51E-16 | 19 | 78 | No hit | No description |
SMART | SM00380 | 1.2E-34 | 19 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 19 | 77 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.787 | 19 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MVRPKAARAE RRSAAAAGKF KGVRMRKWGK WVAEVRQPNS RDRIWLGSYD TAEEAARAYD 60 AAAVSLRGHT AKLNFPDDPP RIQHGVHLTP PEIQVAASRH ARSNSTPETK QPAVENIFFP 120 PPPVPPEVGG GTSFCDQFSA EACYLVGQER RDEDHHTGAA LSLDSSRIVW NL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 11 | 76 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019193990.1 | 3e-81 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A022QAY1 | 4e-42 | A0A022QAY1_ERYGU; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A1J6L2V2 | 7e-42 | A0A1J6L2V2_NICAT; Ethylene-responsive transcription factor erf016 | ||||
TrEMBL | A0A1S4DM94 | 8e-42 | A0A1S4DM94_TOBAC; ethylene-responsive transcription factor ERF016-like | ||||
TrEMBL | A0A1U7XIG9 | 8e-42 | A0A1U7XIG9_NICSY; ethylene-responsive transcription factor ERF016-like | ||||
TrEMBL | M1C4W1 | 7e-42 | M1C4W1_SOLTU; Uncharacterized protein | ||||
STRING | XP_009791847.1 | 1e-42 | (Nicotiana sylvestris) | ||||
STRING | PGSC0003DMT400059885 | 1e-42 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 4e-26 | ERF family protein |