PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000127.1_g00025.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 81aa    MW: 9546.66 Da    PI: 7.5188
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000127.1_g00025.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-09347345
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                             +WT+   +++ +a + +  +   +W  Iar++g g+++++++ ++ 
  Itr_sc000127.1_g00025.1  3 SWTARQNKKFEEALAIYDREtpdRWYNIARMVG-GKSAEEVRRHYE 47
                             6*****************88*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129313.205154IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.5E-5356IPR009057Homeodomain-like
CDDcd001673.20E-7350No hitNo description
PfamPF002494.6E-7347IPR001005SANT/Myb domain
SuperFamilySSF466894.24E-13357IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MASWTARQNK KFEEALAIYD RETPDRWYNI ARMVGGKSAE EVRRHYELLV KDIMQIENDQ  60
VPLPNYRAAE SNGRGYANEQ R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-274721179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152525.11e-54PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1731e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6J2A22e-46A0A1J6J2A2_NICAT; Protein radialis-like 6
STRINGXP_009771192.17e-47(Nicotiana sylvestris)
STRINGXP_009611761.17e-47(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-34RAD-like 6