PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000127.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 468aa MW: 49530.1 Da PI: 9.4922

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000127.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Itr_sc000127.1_g00001.1 47 FVCEICSKGFQRDQNLQLHRRGH 69 89*******************88 PP
2	zf-C2H2	11	0.0013	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H +t+ Itr_sc000127.1_g00001.1 122 FKCERCSKKYAVRSDWKAHSKTC 144 89*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.5E-5	46	69	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.66E-6	46	69	No hit	No description
SMART	SM00355	0.036	47	69	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	47	69	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.0E-4	110	143	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.66E-6	117	142	No hit	No description
SMART	SM00355	140	122	142	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MAAPSEGETS AQLSVVSKRK RSLPGTPDPD AEVIALSPKS LLATNRFVCE ICSKGFQRDQ 60 NLQLHRRGHN LPWTLKQRGG KPKRRVYVCP ETTCVHHHPS RALGDLTGIK KHFCRKHGEK 120 KFKCERCSKK YAVRSDWKAH SKTCGTKEYR CDCGTIFSRK DSFITHRAFC DALAQESMRY 180 QPLEEPSKVA APPPTTTATS SSSPPPPPLT PSTGVLSPVV SVQSTGWSDL AESRLDLIEK 240 GLSKGKELMI AFGLNLAENQ SGLSQHKKPT LPPVPTAGAG VPLFSTSNVN GEALQSVFAS 300 STVAGDSRPP SAGSASAEPM FLSLSCPIYL SGNAASSVFP WAASRQFAAP SRPPAALSAT 360 ALLQKAAEIG ATSSHGSFLC SLGLATSSGS KPQDVKQENK SISSPSSPAM IFGNNPPTLD 420 FLGVGAGATT PPSFLGSMNN GSGAGVASTG DCWDDTSDRK FGFLQQNI

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MAAPSEGETS AQLSVVSKRK RSLPGTPDPD AEVIALSPKS LLATNRFVCE ICSKGFQRDQ  60
NLQLHRRGHN LPWTLKQRGG KPKRRVYVCP ETTCVHHHPS RALGDLTGIK KHFCRKHGEK  120
KFKCERCSKK YAVRSDWKAH SKTCGTKEYR CDCGTIFSRK DSFITHRAFC DALAQESMRY  180
QPLEEPSKVA APPPTTTATS SSSPPPPPLT PSTGVLSPVV SVQSTGWSDL AESRLDLIEK  240
GLSKGKELMI AFGLNLAENQ SGLSQHKKPT LPPVPTAGAG VPLFSTSNVN GEALQSVFAS  300
STVAGDSRPP SAGSASAEPM FLSLSCPIYL SGNAASSVFP WAASRQFAAP SRPPAALSAT  360
ALLQKAAEIG ATSSHGSFLC SLGLATSSGS KPQDVKQENK SISSPSSPAM IFGNNPPTLD  420
FLGVGAGATT PPSFLGSMNN GSGAGVASTG DCWDDTSDRK FGFLQQNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-32	118	183	3	68	Zinc finger protein JACKDAW
5b3h_F	1e-32	118	183	3	68	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019153412.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_019153413.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_019153414.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-108	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2Z7AM57	1e-131	A0A2Z7AM57_9LAMI; Zinc finger protein JACKDAW-like
STRING	XP_009612196.1	1e-131	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-103	C2H2 family protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]