PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000122.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 549aa    MW: 61143.7 Da    PI: 5.3111
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000122.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.47.2e-31191632102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---.SSBTTTT............ CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkd.eekksks............ 74 
                              Fl+k+y+++ed++++ ++sws+++nsfvv++  efak++LpkyFkh+nf+SFvRQLn+Y     ++  + + ++            
  Itr_sc000122.1_g00014.1  19 FLSKTYDMVEDPSTDAVVSWSKSNNSFVVWNVPEFAKDILPKYFKHNNFSSFVRQLNTYICLAETSlVSPDGQNsviafmsclgnl 104
                              9**********************************************************754433302222222579********* PP

                              ...............................XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  75 ...............................kekiweFkhksFkkgkkellekikrkks 102
                                                             +++ weF+++ F +g+++ll++i r+k+
  Itr_sc000122.1_g00014.1 105 ltglpymllasdlyffysllfslgkqgfrkvDPDRWEFANEGFLRGHRHLLKSITRRKH 163
                              ***************999999998877765449***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.8E-36977IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.8E-4815161IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.25E-231777IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.1E-2819161IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-141942IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-145769IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-147082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.8E-36131156IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MDGGQESAAA AAGNSPPPFL SKTYDMVEDP STDAVVSWSK SNNSFVVWNV PEFAKDILPK  60
YFKHNNFSSF VRQLNTYICL AETSLVSPDG QNSVIAFMSC LGNLLTGLPY MLLASDLYFF  120
YSLLFSLGKQ GFRKVDPDRW EFANEGFLRG HRHLLKSITR RKHVQSHQQP PQVQNSSVGS  180
CVEVGKFGLE EEVDRLKRDK NILMQELVKL RQQQQATDHQ LQNVGQKVHM MEQRQQQMMS  240
FLAKAMQSPS FVAQMVHQQS DNMRISGVNK KRRLPNQEEE NFNVKPVATL PDGQIVRFQP  300
LMNEAAKSLL RQILKINASA RLEPKFNNTS GFLTDNTHST PNVLDSGDTA NHISGVSLSE  360
VLPTPSMPHL ASETGLAFNH HPTSVSQIQP SSGVMPNDAK VTKFPEMNAL SSKVDKALSN  420
FFQAQGHMTD DNANHFDRMR SESQDVGYID TPSGFVDDIV PDGFSSDPDI DVLMDEMPKL  480
PGINDVFWDQ ILSASPLTGD TDDINSVVLE NGVEEHDLQT EDVEWDKLKH MSHLTEQMGL  540
LASGSSNAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2098919104Heat shock factor protein 1
5d5v_B3e-2098919104Heat shock factor protein 1
5d5v_D3e-2098919104Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195558.10.0PREDICTED: heat stress transcription factor A-1b isoform X1
TrEMBLA0A2G3ARP30.0A0A2G3ARP3_CAPCH; Heat stress transcription factor A-1
STRINGXP_009623591.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-135heat shock factor 3