PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000115.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 350aa    MW: 38527.4 Da    PI: 5.7986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000115.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.4e-1378120246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              ++++++E+el++++++  G++ W+ Ia+ ++ gRt++++k+ w++
  Itr_sc000115.1_g00021.1  78 NNFSPQEEELIIKLHATIGSR-WTIIAQQLP-GRTDNDVKNLWNT 120
                              589******************.*********.**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.3191161IPR017877Myb-like domain
SuperFamilySSF466891.36E-1346130IPR009057Homeodomain-like
PROSITE profilePS5129416.17472126IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-1874126IPR009057Homeodomain-like
SMARTSM007171.6E-1076124IPR001005SANT/Myb domain
PfamPF002493.4E-1278120IPR001005SANT/Myb domain
CDDcd001671.72E-880122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRPHGSCTE KLPSRRGFWD DEYDHDVSRT KTGNWAAISK KTPGMGGRVE RSSRARWSNN  60
RSSRHDVDHH HHQQQDNNNF SPQEEELIIK LHATIGSRWT IIAQQLPGRT DNDVKNLWNT  120
KLKKKLSAMG IDPVTHKPFS QILADYGNIG GFPTAGTSSR PQFGTLNRAL KTTIILSKSQ  180
KSSASAADCC GFLQSNKSSD DSNQYMDLLS ELQAIKSITE STNYSSAAPD AINIVSPPSS  240
LSSSSSLTSP PLAAQEKTCT GFSWCDFLLE DAFLPLNVQQ AASEDWEPKN PVDHNTSPED  300
IIKISSSSSS SNNNLEAAAS SSSFVEAMLS REDDDMFLDF PGLSEEPFYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-14161267108B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153161.11e-165PREDICTED: transcription factor MYB35-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123481922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.11e-26MYB_related family protein