PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000114.1_g00032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 29527.4 Da PI: 5.1825 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128 | 7.2e-40 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 +p+GfrF Pt+eelv++yL +k++g++ +++ vi+ v+iy + Pw+Lp+ + ++++++w++F++ ++ a+g ++nr t++gy Itr_sc000114.1_g00032.1 4 MPVGFRFYPTEEELVSFYLGNKLRGERQDIDLVIPVVNIYLHRPWELPQlagvASYGDDEQWFYFMPGPENIARGGKPNRLTTEGY 89 699***************************888***************656655556889************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg v+s +++++g k+t+vfy+grap+g+kt+W ++ey++ Itr_sc000114.1_g00032.1 90 WKATGCPSLVFSINNRVIGEKRTMVFYTGRAPNGTKTEWKINEYKA 135 ********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-45 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.001 | 4 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-19 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEDMPVGFRF YPTEEELVSF YLGNKLRGER QDIDLVIPVV NIYLHRPWEL PQLAGVASYG 60 DDEQWFYFMP GPENIARGGK PNRLTTEGYW KATGCPSLVF SINNRVIGEK RTMVFYTGRA 120 PNGTKTEWKI NEYKAVHGEA SASAPLSDLE LRQEFSLCRL YKKPKCDRAF DRRPLSVTAV 180 RRRIARQPPP QPPPDSVQTT AMILPQQDNN NPPANEMTGA GNISPAPEDA VIPSNNAMGT 240 QVFWDNFTPI WDWEDCFNLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-29 | 4 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-29 | 4 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-29 | 4 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-29 | 4 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-29 | 4 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-29 | 4 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-29 | 4 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-29 | 4 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-29 | 4 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-29 | 4 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-29 | 4 | 163 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-29 | 4 | 163 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-29 | 4 | 163 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-29 | 4 | 163 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019159296.1 | 1e-169 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-62 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A068UQS7 | 3e-83 | A0A068UQS7_COFCA; Uncharacterized protein | ||||
STRING | XP_009620854.1 | 3e-83 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 4e-65 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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