PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000110.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 541aa    MW: 60611 Da    PI: 6.3052
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000110.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.52.6e-1381715411374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l+++L++cA+a+s +dl +a+ l+++l++++s +g+p+qRl ay++e+L arl  s+s++yk+l+++e +   s e l+++++++e
  Itr_sc000110.1_g00021.1 171 LKQVLVTCAKAISINDLPKAECLMSQLRQMVSVSGEPIQRLGAYVLEGLVARLDASGSSIYKSLRCKEPE---SFELLSYMHILYE 253
                              5799*****************************************************************9...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              v+P++kf+++ aN aI ea++ge+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   ++  l+ +g+ L+k+Ae
  Itr_sc000110.1_g00021.1 254 VCPYFKFGYMSANGAIAEAMKGENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPHIRITGIDDSTSAyaRRGGLNIVGKMLSKLAE 339
                              ***************************************************************998899999************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +++vpfef++ ++ +  ++++ +L +++gEalaVn++++lh+++desvs++++rde+L+lvk+l+Pkvv++veqe+++n+++F+ r
  Itr_sc000110.1_g00021.1 340 SFNVPFEFHA-ASMSDYEVQVADLGIHTGEALAVNFAFMLHHTPDESVSTQNHRDELLRLVKGLNPKVVTLVEQECNTNTAPFFPR 424
                              **********.78888899******************************************************************* PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              fle+l+yy a+f+s++++lpre+++ri+vE+++l+r++vn++aceg+er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll 
  Itr_sc000110.1_g00021.1 425 FLETLDYYIAMFESIDVNLPREDKQRINVEQHCLARDVVNIIACEGTERVERHELLGKWKSRFRMAGFSPYPLSSLVNATIKTLLG 510
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++s+ yr+ee++g+l+lgW++r Lv+ +aW+
  Itr_sc000110.1_g00021.1 511 NYSSK-YRLEERDGALYLGWMKRDLVASCAWK 541
                              ***88.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.104145522IPR005202Transcription factor GRAS
PfamPF035149.1E-136171541IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MRASRLRRTG MSNTLCFQQK AEAYCVPQFQ ILDQLSHSDN GGNHSIQAYS DHCCTRELSS  60
KNGSHARCNS SSTISFSPYG SPMLQQQEFQ SYPLDLHQSP ETKYSSPISM SSSITDDMTD  120
FRHKLKELES VMLGPDSDVP ECYELALPSS LAPPELDSWR QMMEGIPVGD LKQVLVTCAK  180
AISINDLPKA ECLMSQLRQM VSVSGEPIQR LGAYVLEGLV ARLDASGSSI YKSLRCKEPE  240
SFELLSYMHI LYEVCPYFKF GYMSANGAIA EAMKGENRVH IIDFQIGQGS QWVTLIQAFA  300
ARPGGPPHIR ITGIDDSTSA YARRGGLNIV GKMLSKLAES FNVPFEFHAA SMSDYEVQVA  360
DLGIHTGEAL AVNFAFMLHH TPDESVSTQN HRDELLRLVK GLNPKVVTLV EQECNTNTAP  420
FFPRFLETLD YYIAMFESID VNLPREDKQR INVEQHCLAR DVVNIIACEG TERVERHELL  480
GKWKSRFRMA GFSPYPLSSL VNATIKTLLG NYSSKYRLEE RDGALYLGWM KRDLVASCAW  540
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-581735416375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194539.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_019194540.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1J6I0730.0A0A1J6I073_NICAT; Scarecrow-like transcription factor pat1
STRINGXP_009761823.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]